Zhijian Xu

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 41

Top Topics

Learning Platform

Protein Data Bank

Molecular Dynamics

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

Comput. Biol. Medicine

Publications

Yuxuan Bian, Xuan Ju, Jiangtong Li, Zhijian Xu, Dawei Cheng, Qiang Xu
Multi-Patch Prediction: Adapting LLMs for Time Series Representation Learning. CoRR (2024)
Zhijian Xu, Ailing Zeng, Qiang Xu
FITS: Modeling Time Series with 10k Parameters. ICLR (2024)
Jianfang Zhang, Kinga Virág Gulyás, Jintian Li, Minfei Ma, Liping Zhou, Leyun Wu, Ruisheng Xiong, Mate Erdelyi, Weiliang Zhu, Zhijian Xu
Unexpected effect of halogenation on the water solubility of small organic compounds. Comput. Biol. Medicine 172 (2024)
Zhijian Xu, Yuxuan Bian, Jianyuan Zhong, Xiangyu Wen, Qiang Xu
Beyond Trend and Periodicity: Guiding Time Series Forecasting with Textual Cues. CoRR (2024)
Minfei Ma, Xinben Zhang, Liping Zhou, Zijian Han, Yulong Shi, Jintian Li, Leyun Wu, Zhijian Xu, Weiliang Zhu
D3Rings: A Fast and Accurate Method for Ring System Identification and Deep Generation of Drug-Like Cyclic Compounds. J. Chem. Inf. Model. 64 (3) (2024)
Zhijian Xu, Xingyue Guo, Juan Wang
Lightweight Multi-scale Transformer for Automatic Skin Lesions Segmentation. ICDIP (2023)
Haiyan Cai, Yingying Wang, Jing Zhang, Zhenquan Wei, Teng Yan, Chenxi Feng, Zhijian Xu, Aiwu Zhou, Yingli Wu
Discovery of Novel SIRT1/2 Inhibitors with Effective Cytotoxicity against Human Leukemia Cells. J. Chem. Inf. Model. 63 (15) (2023)
Hongning Zhang, Mingkun Lu, Gaole Lin, Lingyan Zheng, Wei Zhang, Zhijian Xu, Feng Zhu
SoCube: an innovative end-to-end doublet detection algorithm for analyzing scRNA-seq data. Briefings Bioinform. 24 (3) (2023)
Muxi Chen, Zhijian Xu, Ailing Zeng, Qiang Xu
FrAug: Frequency Domain Augmentation for Time Series Forecasting. CoRR (2023)
Tianhao Shi, Yang Zhang, Zhijian Xu, Chong Chen, Fuli Feng, Xiangnan He, Qi Tian
Preliminary Study on Incremental Learning for Large Language Model-based Recommender Systems. CoRR (2023)
Yulong Shi, Xinben Zhang, Yanqing Yang, Tingting Cai, Cheng Peng, Leyun Wu, Liping Zhou, Jiaxin Han, Minfei Ma, Weiliang Zhu, Zhijian Xu
D3CARP: a comprehensive platform with multiple-conformation based docking, ligand similarity search and deep learning approaches for target prediction and virtual screening. Comput. Biol. Medicine 164 (2023)
Zhijian Xu, Ailing Zeng, Qiang Xu
FITS: Modeling Time Series with 10k Parameters. CoRR (2023)
Leyun Wu, Guangpu Wang, Liping Zhou, Mengxia Mo, Yulong Shi, Bo Li, Leimiao Yin, Qiang Zhao, Yongqing Yang, Chengkun Wu, Zhijian Xu, Weiliang Zhu
Molecular dynamics study on the behavior and binding mechanism of target protein Transgelin-2 with its agonist TSG12 for anti-asthma drug discovery. Comput. Biol. Medicine 153 (2023)
Kangshuai Guo, Zhijian Xu, Shichao Luo, Feigao Wei, Yan Wang, Yanru Zhang
Invisible Video Watermark Method Based on Maximum Voting and Probabilistic Superposition. ACM Multimedia (2023)
Leyun Wu, Cheng Peng, Yanqing Yang, Yulong Shi, Liping Zhou, Zhijian Xu, Weiliang Zhu
Exploring the immune evasion of SARS-CoV-2 variant harboring E484K by molecular dynamics simulations. Briefings Bioinform. 23 (1) (2022)
Ying Qian, Xuelian Li, Jian Wu, Aimin Zhou, Zhijian Xu, Qian Zhang
Picture-word order compound protein interaction: Predicting compound-protein interaction using structural images of compounds. J. Comput. Chem. 43 (4) (2022)
Ying Qian, Xuelian Li, Jian Wu, Aimin Zhou, Zhijian Xu, Qian Zhang
Cover Image. J. Comput. Chem. 43 (4) (2022)
Jiaxin Han, Tingting Liu, Xinben Zhang, Yanqing Yang, Yulong Shi, Jintian Li, Minfei Ma, Weiliang Zhu, Likun Gong, Zhijian Xu
D3AI-Spike: A deep learning platform for predicting binding affinity between SARS-CoV-2 spike receptor binding domain with multiple amino acid mutations and human angiotensin-converting enzyme 2. Comput. Biol. Medicine 151 (Part) (2022)
Chen Yan, Zhijian Xu, Zhanyuan Yin, Xiaoyu Ji, Wenyuan Xu
Rolling Colors: Adversarial Laser Exploits against Traffic Light Recognition. CoRR (2022)
Cheng Peng, Xinben Zhang, Zhijian Xu, Zhaoqiang Chen, Yanqing Yang, Tingting Cai, Weiliang Zhu
D3PM: a comprehensive database for protein motions ranging from residue to domain. BMC Bioinform. 23 (1) (2022)
Liping Zhou, Tingting Liu, Mengxia Mo, Yulong Shi, Leyun Wu, Yishui Li, Qiuping Qin, Weiliang Zhu, Chengkun Wu, Likun Gong, Zhijian Xu
Exploring the Binding Affinity and Mechanism between ACE2 and the Trimers of Delta and Omicron Spike Proteins by Molecular Dynamics Simulation and Bioassay. J. Chem. Inf. Model. 62 (18) (2022)
Chen Yan, Zhijian Xu, Zhanyuan Yin, Xiaoyu Ji, Wenyuan Xu
Rolling Colors: Adversarial Laser Exploits against Traffic Light Recognition. USENIX Security Symposium (2022)
Minhao Liu, Ailing Zeng, Muxi Chen, Zhijian Xu, Qiuxia Lai, Lingna Ma, Qiang Xu
SCINet: Time Series Modeling and Forecasting with Sample Convolution and Interaction. NeurIPS (2022)
Minfei Ma, Yanqing Yang, Leyun Wu, Liping Zhou, Yulong Shi, Jiaxin Han, Zhijian Xu, Weiliang Zhu
Conserved protein targets for developing pan-coronavirus drugs based on sequence and 3D structure similarity analyses. Comput. Biol. Medicine 145 (2022)
Yanqing Yang, Deshan Zhou, Xinben Zhang, Yulong Shi, Jiaxin Han, Liping Zhou, Leyun Wu, Minfei Ma, Jintian Li, Shaoliang Peng, Zhijian Xu, Weiliang Zhu
D3AI-CoV: a deep learning platform for predicting drug targets and for virtual screening against COVID-19. Briefings Bioinform. 23 (3) (2022)
Xingyue Guo, Juan Wang, Zhijian Xu
Multimodal medical image fusion based on average cross bilateral filtering. ICIT (2022)
Yanqing Yang, Zhengdan Zhu, Xiaoyu Wang, Xinben Zhang, Kaijie Mu, Yulong Shi, Cheng Peng, Zhijian Xu, Weiliang Zhu
Ligand-based approach for predicting drug targets and for virtual screening against COVID-19. Briefings Bioinform. 22 (2) (2021)
Yonghui Cui, Zhijian Xu, Shaoliang Peng
IDOS: Improved D3DOCK on Spark. ISBRA (2021)
Xiaoyu Wang, Xinben Zhang, Cheng Peng, Yulong Shi, Huiyu Li, Zhijian Xu, Weiliang Zhu
D3DistalMutation: a Database to Explore the Effect of Distal Mutations on Enzyme Activity. J. Chem. Inf. Model. 61 (5) (2021)
Minhao Liu, Zhijian Xu, Qiang Xu
DeepFIB: Self-Imputation for Time Series Anomaly Detection. CoRR (2021)
Xiaoqi Wang, Bin Xin, Weihong Tan, Zhijian Xu, Kenli Li, Fei Li, Wu Zhong, Shaoliang Peng
DeepR2cov: deep representation learning on heterogeneous drug networks to discover anti-inflammatory agents for COVID-19. Briefings Bioinform. 22 (6) (2021)
Deshan Zhou, Zhijian Xu, Wentao Li, Xiaolan Xie, Shaoliang Peng
MultiDTI: drug-target interaction prediction based on multi-modal representation learning to bridge the gap between new chemical entities and known heterogeneous network. Bioinform. 37 (23) (2021)
Zhengdan Zhu, Zhijian Xu, Weiliang Zhu
Interaction Nature and Computational Methods for Halogen Bonding: A Perspective. J. Chem. Inf. Model. 60 (6) (2020)
Cheng Peng, Jinan Wang, Zhijian Xu, Tingting Cai, Weiliang Zhu
Accurate prediction of relative binding affinities of a series of HIV-1 protease inhibitors using semi-empirical quantum mechanical charge. J. Comput. Chem. 41 (19) (2020)
Amina Abula, Zhijian Xu, Zhengdan Zhu, Cheng Peng, Zhaoqiang Chen, Weiliang Zhu, Haji Akber Aisa
Substitution Effect of the Trifluoromethyl Group on the Bioactivity in Medicinal Chemistry: Statistical Analysis and Energy Calculations. J. Chem. Inf. Model. 60 (12) (2020)
Zhijian Xu, Qian Zhang, Jiye Shi, Weiliang Zhu
Underestimated Noncovalent Interactions in Protein Data Bank. J. Chem. Inf. Model. 59 (8) (2019)
Zhaoqiang Chen, Xinben Zhang, Cheng Peng, Jinan Wang, Zhijian Xu, Kaixian Chen, Jiye Shi, Weiliang Zhu
D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket Dynamics. J. Chem. Inf. Model. 59 (8) (2019)
Feiyan Cheng, Junsheng Shi, Lijun Yun, Zhenhua Du, Zhijian Xu, Xiaoqiao Huang, Zaiqing Chen
A new enhancement algorithm for the low illumination image based on fog-degraded model. IPTA (2018)
Qian Zhang, Zhijian Xu, Weiliang Zhu
The Underestimated Halogen Bonds Forming with Protein Side Chains in Drug Discovery and Design. J. Chem. Inf. Model. 57 (1) (2017)
Qian Zhang, Zhijian Xu, Jiye Shi, Weiliang Zhu
Underestimated Halogen Bonds Forming with Protein Backbone in Protein Data Bank. J. Chem. Inf. Model. 57 (7) (2017)
Haiyan Cai, Ting Wang, Zhuo Yang, Zhijian Xu, Guimin Wang, He-Yao Wang, Weiliang Zhu, Kaixian Chen
Combined Virtual Screening and Substructure Search for Discovery of Novel FABP4 Inhibitors. J. Chem. Inf. Model. 57 (9) (2017)
Haoyuan Li, Hua Li, Zhiwei Li, Fuchang Lin, De Liu, Wenjuan Wang, Bowen Wang, Zhijian Xu
T pattern fuse construction in segment metallized film capacitors based on self-healing characteristics. Microelectron. Reliab. 55 (6) (2015)
Qian Cheng, Shaoliang Peng, Yutong Lu, Weiliang Zhu, Zhijian Xu, Xinben Zhang
mD3DOCKxb: A Deep Parallel Optimized Software for Molecular Docking with Intel Xeon Phi Coprocessors. CCGRID (2015)
Zhijian Xu, Zhuo Yang, Yingtao Liu, Yunxiang Lu, Kaixian Chen, Weiliang Zhu
Halogen Bond: Its Role beyond Drug-Target Binding Affinity for Drug Discovery and Development. J. Chem. Inf. Model. 54 (1) (2014)
Guanghui Cheng, Xiaofeng Yang, Ning Wu, Zhijian Xu, Hongfu Zhao, Yuefeng Wang, Tian Liu
Multi-atlas-based segmentation of the parotid glands of MR images in patients following head-and-neck cancer radiotherapy. Medical Imaging: Computer-Aided Diagnosis (2013)
Zhijian Xu, Siming Luo, Dan Li, Hongxia Li
A Research of Chinese Sentence Constituent Labeling Based on History Hidden Markov Model. IALP (2012)
Huai-bin Wang, Hong-liang Yang, Zhijian Xu, Zheng Yuan
A Clustering Algorithm Use SOM and K-Means in Intrusion Detection. ICEE (2010)
Huai-bin Wang, Zhijian Xu, Chundong Wang, Zheng Yuan
A New Algorithm Combining Self Organizing Map with Simulated Annealing Used in Intrusion Detection. BMEI (2009)