Riccardo Colombo

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 15

Top Topics

Intensive Care Unit

Systems Biology

Constraint Based Modeling

Caenorhabditis Elegans

Top Venues

PLoS Comput. Biol.

Publications

Davide Ottolina, Beatrice Cairo, Tommaso Fossali, Claudio Mazzucco, Antonio Castelli, Roberto Rech, Emanuele Catena, Alberto Porta, Riccardo Colombo
Cardiorespiratory coupling in mechanically ventilated patients studied via synchrogram analysis. Medical Biol. Eng. Comput. 61 (6) (2023)
Francesca Gelpi, Vlasta Bari, Beatrice Cairo, Beatrice De Maria, Noemi Cornara, Riccardo Colombo, Alberto Porta
Derangement of Cardiovascular Regulatory Mechanisms in COVID-19 Patients in Intensive Care Unit and its Association with Mortality. CinC (2022)
Davide Maspero, Chiara Damiani, Marco Antoniotti, Alex Graudenzi, Marzia Di Filippo, Marco Vanoni, Giulio Caravagna, Riccardo Colombo, Daniele Ramazzotti, Dario Pescini
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System. Fundam. Informaticae 171 (1-4) (2020)
Chiara Damiani, Davide Maspero, Marzia Di Filippo, Riccardo Colombo, Dario Pescini, Alex Graudenzi, Hans V. Westerhoff, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. PLoS Comput. Biol. 15 (2) (2019)
Marco S. Nobile, Paolo Cazzaniga, Daniela Besozzi, Riccardo Colombo, Giancarlo Mauri, Gabriella Pasi
Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization. Swarm Evol. Comput. 39 (2018)
Riccardo Colombo, Chiara Damiani, David R. Gilbert, Monika Heiner, Giancarlo Mauri, Dario Pescini
Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes. BMC Bioinform. (7) (2018)
Chiara Damiani, Marzia Di Filippo, Dario Pescini, Davide Maspero, Riccardo Colombo, Giancarlo Mauri
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis. Bioinform. 33 (14) (2017)
Luca Terruzzi, Riccardo Colombo, Michele Segata
Poster: On the effects of cooperative platooning on traffic shock waves. VNC (2017)
Alberto Porta, Vlasta Bari, Beatrice De Maria, Anielle C. M. Takahashi, Stefano Guzzetti, Riccardo Colombo, Aparecida Maria Catai, Ferdinando Raimondi, Luca Faes
Quantifying Net Synergy/Redundancy of Spontaneous Variability Regulation via Predictability and Transfer Entropy Decomposition Frameworks. IEEE Trans. Biomed. Eng. 64 (11) (2017)
Chiara Damiani, Riccardo Colombo, Daniela Gaglio, Fabrizia Mastroianni, Dario Pescini, Hans V. Westerhoff, Giancarlo Mauri, Marco Vanoni, Lilia Alberghina
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect. PLoS Comput. Biol. 13 (9) (2017)
Marzia Di Filippo, Chiara Damiani, Riccardo Colombo, Dario Pescini, Giancarlo Mauri
Constraint-Based Modeling and Simulation of Cell Populations. WIVACE (2016)
Fabio Cumbo, Marco S. Nobile, Chiara Damiani, Riccardo Colombo, Giancarlo Mauri, Paolo Cazzaniga
COSYS: A Computational Infrastructure for Systems Biology. CIBB (2016)
Riccardo Colombo, Chiara Damiani, Giancarlo Mauri, Dario Pescini
Constraining Mechanism Based Simulations to Identify Ensembles of Parametrizations to Characterize Metabolic Features. CIBB (2016)
Marzia Di Filippo, Riccardo Colombo, Chiara Damiani, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models. Comput. Biol. Chem. 62 (2016)
Chiara Damiani, Riccardo Colombo, Marzia Di Filippo, Dario Pescini, Giancarlo Mauri
Linking Alterations in Metabolic Fluxes with Shifts in Metabolite Levels by Means of Kinetic Modeling. WIVACE (2016)
Ettore Murabito, Riccardo Colombo, Chengkun Wu, Malkhey Verma, Samrina Rehman, Jacky L. Snoep, Shaoliang Peng, Naiyang Guan, Xiangke Liao, Hans V. Westerhoff
SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing. Quant. Biol. 3 (1) (2015)
Marco S. Nobile, Gabriella Pasi, Paolo Cazzaniga, Daniela Besozzi, Riccardo Colombo, Giancarlo Mauri
Proactive Particles in Swarm Optimization: A self-tuning algorithm based on Fuzzy Logic. FUZZ-IEEE (2015)
Chiara Damiani, Dario Pescini, Riccardo Colombo, Sara Molinari, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes. Nat. Comput. 13 (3) (2014)
Alberto Porta, Andrea Marchi, Vlasta Bari, Aparecida Maria Catai, Stefano Guzzetti, Ferdinando Raimondi, Riccardo Colombo
Directionality in cardiovascular variability interactions during head-down tilt test. EMBC (2014)
Chiara Damiani, Riccardo Colombo, Sara Molinari, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri
An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis. WIVACE (2013)
Flavio Amara, Riccardo Colombo, Paolo Cazzaniga, Dario Pescini, Attila Csikász-Nagy, Marco Falconi, Daniela Besozzi, Paolo Plevani
In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae. BMC Syst. Biol. 7 (2013)