Marco Vanoni

Publication Activity (10 Years)

Years Active: 2007-2023
Publications (10 Years): 13

Top Topics

Cluster Analysis

Data Integration

Top Venues

PLoS Comput. Biol.

IEEE Control. Syst. Lett.

BMC Medical Informatics Decis. Mak.

Publications

Bruno G. Galuzzi, Stefano Izzo, Fabio Giampaolo, Salvatore Cuomo, Marco Vanoni, Lilia Alberghina, Chiara Damiani, Francesco Piccialli
Coupling constrained-based flux sampling and clustering to tackle cancer metabolic heterogeneity. PDP (2023)
Bruno G. Galuzzi, Marco Vanoni, Chiara Damiani
Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells. BMC Bioinform. (6) (2022)
Massimiliano D'Angelo, Pasquale Palumbo, Stefano Busti, Marco Vanoni
A coarse-grain model for cellular growth accounting for ribosome synthesis. CDC (2022)
Marzia Di Filippo, Dario Pescini, Bruno Giovanni Galuzzi, Marcella Bonanomi, Daniela Gaglio, Eleonora Mangano, Clarissa Consolandi, Lilia Alberghina, Marco Vanoni, Chiara Damiani
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation. PLoS Comput. Biol. 18 (2) (2022)
Rosy Tsopra, Xosé M. Fernández, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Ugur Sezerman, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Mihai Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Nicolae Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Florian Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H. Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabiles, Anita Burgun
A framework for validating AI in precision medicine: considerations from the European ITFoC consortium. BMC Medical Informatics Decis. Mak. 21 (1) (2021)
Davide Maspero, Chiara Damiani, Marco Antoniotti, Alex Graudenzi, Marzia Di Filippo, Marco Vanoni, Giulio Caravagna, Riccardo Colombo, Daniele Ramazzotti, Dario Pescini
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System. Fundam. Informaticae 171 (1-4) (2020)
Davide Maspero, Marzia Di Filippo, Fabrizio Angaroni, Dario Pescini, Giancarlo Mauri, Marco Vanoni, Alex Graudenzi, Chiara Damiani
Integration of Single-Cell RNA-Sequencing Data into Flux Balance Cellular Automata. CIBB (2019)
Chiara Damiani, Davide Maspero, Marzia Di Filippo, Riccardo Colombo, Dario Pescini, Alex Graudenzi, Hans V. Westerhoff, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. PLoS Comput. Biol. 15 (2) (2019)
Costanzo Manes, Pasquale Palumbo, Valerio Cusimano, Marco Vanoni, Lilia Alberghina
Modeling Biological Timing and Synchronization Mechanisms by Means of Interconnections of Stochastic Switches. IEEE Control. Syst. Lett. 2 (1) (2018)
Pasquale Palumbo, Marco Vanoni, Federico Papa, Stefano Busti, Lilia Alberghina
Whole yeast model: what and why. PeerJ Prepr. 6 (2018)
Chiara Damiani, Riccardo Colombo, Daniela Gaglio, Fabrizia Mastroianni, Dario Pescini, Hans V. Westerhoff, Giancarlo Mauri, Marco Vanoni, Lilia Alberghina
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect. PLoS Comput. Biol. 13 (9) (2017)
Pasquale Palumbo, Marco Vanoni, Federico Papa, Stefano Busti, Meike T. Wortel, Bas Teusink, Lilia Alberghina
An Integrated Model Quantitatively Describing Metabolism, Growth and Cell Cycle in Budding Yeast. WIVACE (2017)
Marzia Di Filippo, Riccardo Colombo, Chiara Damiani, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models. Comput. Biol. Chem. 62 (2016)
Chiara Damiani, Dario Pescini, Riccardo Colombo, Sara Molinari, Lilia Alberghina, Marco Vanoni, Giancarlo Mauri
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes. Nat. Comput. 13 (3) (2014)
Chiara Damiani, Riccardo Colombo, Sara Molinari, Dario Pescini, Daniela Gaglio, Marco Vanoni, Lilia Alberghina, Giancarlo Mauri
An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis. WIVACE (2013)
Elena Papaleo, Valeria Ranzani, Farida Tripodi, Alessandro Vitriolo, Claudia Cirulli, Piercarlo Fantucci, Lilia Alberghina, Marco Vanoni, Luca De Gioia, Paola Coccetti
An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes. PLoS Comput. Biol. 7 (5) (2011)
Stefano Busti, Paola Coccetti, Lilia Alberghina, Marco Vanoni
. Sensors 10 (6) (2010)
Roberta Alfieri, Matteo Barberis, Ferdinando Chiaradonna, Daniela Gaglio, Luciano Milanesi, Marco Vanoni, Edda Klipp, Lilia Alberghina
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation. BMC Bioinform. 10 (S-12) (2009)
Chiara Balestrieri, Lilia Alberghina, Marco Vanoni, Ferdinando Chiaradonna
Data recovery and integration from public databases uncovers transformation-specific transcriptional downregulation of cAMP-PKA pathway-encoding genes. BMC Bioinform. 10 (S-12) (2009)
Matteo Barberis, Edda Klipp, Marco Vanoni, Lilia Alberghina
/S Network. PLoS Comput. Biol. 3 (4) (2007)