Yuichi Shiraishi

Publication Activity (10 Years)

Years Active: 2008-2020
Publications (10 Years): 8

Top Topics

Data Partitioning

Nucleotide Sequences

Top Venues

J. Open Source Softw.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks
Genomic basis for RNA alterations in cancer. Nat. 578 (7793) (2020)
Takuya Moriyama, Seiya Imoto, Shuto Hayashi, Yuichi Shiraishi, Satoru Miyano, Rui Yamaguchi
A Bayesian model integration for mutation calling through data partitioning. Bioinform. 35 (21) (2019)
Hiromu Ochiai, Kenichi Chiba, Ai Okada, Yuichi Shiraishi
hotsub: A batch job engine for cloud services with ETL framework. J. Open Source Softw. 3 (31) (2018)
Ai Okada, Kenichi Chiba, Hiroko Tanaka, Satoru Miyano, Yuichi Shiraishi
A framework for generating interactive reports for cancer genome analysis. J. Open Source Softw. 2 (20) (2017)
Heewon Park, Yuichi Shiraishi, Seiya Imoto, Satoru Miyano
A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (4) (2017)
Takuya Moriyama, Yuichi Shiraishi, Kenichi Chiba, Rui Yamaguchi, Seiya Imoto, Satoru Miyano
OVarCall: Bayesian Mutation Calling Method Utilizing Overlapping Paired-End Reads. ISBRA (2016)
Kenichi Chiba, Yuichi Shiraishi, Yasunobu Nagata, Kenichi Yoshida, Seiya Imoto, Seishi Ogawa, Satoru Miyano
Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data. Bioinform. 31 (1) (2015)
Satoshi Ito, Yuichi Shiraishi, Teppei Shimamura, Kenichi Chiba, Satoru Miyano
High performance computing of a fusion gene detection pipeline on the K computer. BIBM (2015)
Naoto Usuyama, Yuichi Shiraishi, Yusuke Sato, Haruki Kume, Yukio Homma, Seishi Ogawa, Satoru Miyano, Seiya Imoto
HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations. Bioinform. 30 (23) (2014)
Yuichi Shiraishi, Kenji Fukumizu
Statistical approaches to combining binary classifiers for multi-class classification. Neurocomputing 74 (5) (2011)
Shin Suzuki, Tomohiro Yasuda, Yuichi Shiraishi, Satoru Miyano, Masao Nagasaki
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information. BMC Bioinform. 12 (S-14) (2011)
Yuichi Shiraishi, Mariko Okada-Hatakeyama, Satoru Miyano
A rank-based statistical test for measuring synergistic effects between two gene sets. Bioinform. 27 (17) (2011)
Shuhei Kimura, Yuichi Shiraishi, Mariko Okada
Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations. J. Bioinform. Comput. Biol. 8 (4) (2010)
Yuichi Shiraishi, Shuhei Kimura, Mariko Okada
Inferring cluster-based networks from differently stimulated multiple time-course gene expression data. Bioinform. 26 (8) (2010)
Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama
Inference of genetic networks using linear programming machines: Application of a priori knowledge. IJCNN (2009)
Yuichi Shiraishi
Game theoretical analysis of the simple one-vs.-all classifier. Neurocomputing 71 (13-15) (2008)