Shuhei Kimura

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 11

Top Topics

Hierarchically Structured

Gene Expression

Top Venues

Publications

Shuhei Kimura, Hirotaka Kitajima, Masato Tokuhisa, Mariko Okada
Inference of Genetic Networks from Steady-State and Pseudo Time-Series of Single-Cell Gene Expression Data using Modified Random Forests. SSCI (2023)
Shuhei Kimura, Kazuki Sota, Masato Tokuhisa
Inference of Genetic Networks using Random Forests: A Quantitative Weighting Method for Gene Expression Data. CIBCB (2022)
Shuhei Kimura, Daichi Oda, Masato Tokuhisa
Feature Selection using Modified Null Importance. SSCI (2021)
Shuhei Kimura, Takahiro Nozaki, Toshiyuki Murakami
Admittance Control-based Bilateral Control System Considering Position Error. ICM (2021)
Shuhei Kimura, Masato Tokuhisa
Detection of Weak Relevant Variables using Random Forests. SICE (2020)
Shuhei Kimura, Masato Tokuhisa, Mariko Okada
Inference of genetic networks using random forests: Assigning different weights for gene expression data. J. Bioinform. Comput. Biol. 17 (4) (2019)
Shuhei Kimura, Masato Tokuhisa, Akiyuki Uemura, Mariko Okada
Feature Selection based on Random Forests and its Application to a Modeling of Sewage Treatment Plant. TAAI (2019)
Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama
Inference of Genetic Networks Using Random Forests: Use of Different Weights for Time-Series and Static Gene Expression Data. BIBE (2018)
Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama
Inference of genetic networks from time-series of gene expression levels using random forests. CIBCB (2017)
Shuhei Kimura, Masato Tokuhisa, Mariko Okada-Hatakeyama
Simultaneous execution method of gene clustering and network inference. CIBCB (2016)
Masato Tokuhisa, Yuuki Ishihara, Shuhei Kimura, Kenta Oku
Recommending paragraphs of wikipedia pages as a travel guide. IWCIA (2016)
Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama
An Effective Method for the Inference of Reduced S-system Models of Genetic Networks. Inf. Media Technol. 10 (1) (2015)
Shuhei Kimura, Mariko Okada-Hatakeyama
Improvement of reliabilities of regulations using a hierarchical structure in a genetic network. IJCNN (2015)
Shuhei Kimura, Keisuke Hotta, Yoshiki Higo, Hiroshi Igaki, Shinji Kusumoto
Does return null matter? CSMR-WCRE (2014)
Shuhei Kimura, Masanao Sato, Mariko Okada-Hatakeyama
Development of an efficient parameter estimation method for the inference of Vohradský's neural network models of genetic networks. IJCNN (2013)
Shuhei Kimura, Yoshiki Higo, Hiroshi Igaki, Shinji Kusumoto
Move code refactoring with dynamic analysis. ICSM (2012)
Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama
Inference of S-system models of genetic networks by solving linear programming problems and sets of linear algebraic equations. IJCNN (2012)
Shuhei Kimura, Koki Matsumura
Constrained multimodal function optimization using a simple evolutionary algorithm. IEEE Congress on Evolutionary Computation (2011)
Saswati Dana, Takashi Nakakuki, Mariko Hatakeyama, Shuhei Kimura, Soumyendu Raha
Computation of restoration of ligand response in the random kinetics of a prostate cancer cell signaling pathway. Comput. Methods Programs Biomed. 101 (1) (2011)
Shuhei Kimura, Koki Matsumura, Mariko Okada-Hatakeyama
Bootstrap Analysis of Genetic Networks inferred by the Method Using LPMs. ICCSA Workshops (2010)
Shuhei Kimura, Yusuke Amano, Koki Matsumura, Mariko Okada-Hatakeyama
Effective parameter estimation for S-system models using LPMs and evolutionary algorithms. IEEE Congress on Evolutionary Computation (2010)
Shuhei Kimura, Yuichi Shiraishi, Mariko Okada
Inference of Genetic Networks Using Lpms: Assessment of Confidence Values of Regulations. J. Bioinform. Comput. Biol. 8 (4) (2010)
Yuichi Shiraishi, Shuhei Kimura, Mariko Okada
Inferring cluster-based networks from differently stimulated multiple time-course gene expression data. Bioinform. 26 (8) (2010)
Shuhei Kimura, Satoshi Nakayama, Mariko Hatakeyama
Genetic network inference as a series of discrimination tasks. Bioinform. 25 (7) (2009)
Shuhei Kimura, Yuichi Shiraishi, Mariko Hatakeyama
Inference of genetic networks using linear programming machines: Application of a priori knowledge. IJCNN (2009)
Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Hideki Maeda, Koki Matsumura, Mariko Hatakeyama
Function approximation approach to the inference of reduced NGnet models of genetic networks. BMC Bioinform. 9 (2008)
Shuhei Kimura, Koki Matsumura
Density estimation using crossover kernels and its application to a real-coded genetic algorithm. IEEE Congress on Evolutionary Computation (2008)
Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Kotaro Yoshida, Koki Matsumura, Mariko Hatakeyama
Inference of Genetic Networks using a Reduced NGnet Model. IJCNN (2007)
Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama
Function Approximation Approach to the Inference of Normalized Gaussian Network Models of Genetic Networks. IJCNN (2006)
Shuhei Kimura, Kaori Ide, Aiko Kashihara, Makoto Kano, Mariko Hatakeyama, Ryoji Masui, Noriko Nakagawa, Shigeyuki Yokoyama, Seiki Kuramitsu, Akihiko Konagaya
Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm. Bioinform. 21 (7) (2005)
Shuhei Kimura, Koki Matsumura
Genetic algorithms using low-discrepancy sequences. GECCO (2005)
Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Koki Matsumura, Mariko Hatakeyama
Inference of genetic networks using neural network models. Congress on Evolutionary Computation (2005)
Shuhei Kimura, Takuji Kawasaki, Mariko Hatakeyama, Takashi Naka, Fumikazu Konishi, Akihiko Konagaya
OBIYagns: a grid-based biochemical simulator with a parameter estimator. Bioinform. 20 (10) (2004)
Shuhei Kimura, Mariko Hatakeyama, Akihiko Konagaya
Inference of S-system models of genetic networks using a genetic local search. IEEE Congress on Evolutionary Computation (2003)
Shuhei Kimura, Akihiko Konagaya
High dimensional function optimization using a new genetic local search suitable for parallel computers. SMC (2003)