CRANKITE: A fast polypeptide backbone conformation sampler.
Alexei A. PodtelezhnikovDavid L. WildPublished in: Source Code Biol. Medicine (2008)
Keyphrases
- amino acid sequences
- protein sequences
- protein structure
- protein structure prediction
- sequential monte carlo
- protein folding
- monte carlo
- low energy
- amino acids
- markov chain
- secondary structure
- markov chain monte carlo
- molecular biology
- gibbs sampler
- dead end
- protein function
- image segmentation
- connected dominating set
- reversible jump markov chain monte carlo
- minimum energy
- coarse grained
- binding sites
- posterior distribution
- fine grained
- prior knowledge