Akinori Sarai

Publication Activity (10 Years)

Years Active: 1998-2012
Publications (10 Years): 0

Top Topics

Protein Sequences

Statistical Analysis

Top Venues

Comput. Biol. Chem.

Publications

He Huang, Akinori Sarai
Analysis of the relationships between evolvability, thermodynamics, and the functions of intrinsically disordered proteins/regions. Comput. Biol. Chem. 41 (2012)
Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad
Prediction of dinucleotide-specific RNA-binding sites in proteins. BMC Bioinform. 12 (S-13) (2011)
Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov
CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Michael Fernández, Shandar Ahmad, Akinori Sarai
Proteochemometric Recognition of Stable Kinase Inhibition Complexes Using Topological Autocorrelation and Support Vector Machines. J. Chem. Inf. Model. 50 (6) (2010)
Michael Fernández, Akinori Sarai, Shandar Ahmad
Recognition of Drug-Target Interaction Patterns using Genetic Algorithm-optimized Bayesian-regularized Neural Networks and Support Vector Machines. SMC (2009)
Alexey V. Kochetov, Andrey Palyanov, Igor I. Titov, Dmitry A. Grigorovich, Akinori Sarai, Nikolay A. Kolchanov
AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinform. 8 (2007)
Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai
Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. APBC (2006)
M. D. Shaji Kumar, K. Abdulla Bava, M. Michael Gromiha, Ponraj Prabakaran, Koji Kitajima, Hatsuho Uedaira, Akinori Sarai
ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions. Nucleic Acids Res. 34 (Database-Issue) (2006)
Marcos J. Araúzo-Bravo, Shandar Ahmad, Akinori Sarai
Dimensionality of amino acid space and solvent accessibility prediction with neural networks. Comput. Biol. Chem. 30 (2) (2006)
Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai
ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Shandar Ahmad, Akinori Sarai
PSSM-based prediction of DNA binding sites in proteins. BMC Bioinform. 6 (2005)
Akinori Sarai, Jorg Siebers, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism. J. Bioinform. Comput. Biol. 3 (1) (2005)
Goran Neshich, Luiz C. Borro, Roberto H. Higa, Paula R. Kuser, Michel E. B. Yamagishi, Eduardo H. Franco, João N. Krauchenco, Renato Fileto, André A. Ribeiro, George B. P. Bezerra, Thiago M. Velludo, Tomás S. Jimenez, Noboru Furukawa, Hirofumi Teshima, Koji Kitajima, K. Abdulla Bava, Akinori Sarai, Roberto C. Togawa, Adauto L. Mancini
The Diamond STING server. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
K. Abdulla Bava, M. Michael Gromiha, Hatsuho Uedaira, Koji Kitajima, Akinori Sarai
ProTherm, version 4.0: thermodynamic database for proteins and mutants. Nucleic Acids Res. 32 (Database-Issue) (2004)
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, Akinori Sarai
: Database and tool for solvent accessibility representation in proteins. BMC Bioinform. 5 (2004)
Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors. APBC (2004)
Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. Bioinform. 20 (4) (2004)
Shandar Ahmad, Akinori Sarai
Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Alexey V. Kochetov, Akinori Sarai
. Bioinform. 20 (4) (2004)
Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences. Bioinform. 19 (14) (2003)
M. Michael Gromiha, Hatsuho Uedaira, Jianghong An, Samuel Selvaraj, Ponraj Prabakaran, Akinori Sarai
ProTherm, Thermodynamic Database for Proteins and Mutants: developments in version 3.0. Nucleic Acids Res. 30 (1) (2002)
Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai
rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. Nucleic Acids Res. 29 (1) (2001)
Hideaki Mizuno, Yoshimasa Tanaka, Kenta Nakai, Akinori Sarai
ORI-GENE: gene classification based on the evolutionary tree. Bioinform. 17 (1) (2001)
Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai
Thermodynamic database for protein-nucleic acid interactions (ProNIT). Bioinform. 17 (11) (2001)
Julia V. Ponomarenko, Dagmara P. Furman, Anatoly S. Frolov, Nikolay L. Podkolodny, Galina Orlova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Akinori Sarai
ACTIVITY: a database on DNA/RNA sites activity adapted to apply sequence-activity relationships from one system to another. Nucleic Acids Res. 29 (1) (2001)
Kenji Sayano, Hidetoshi Kono, M. Michael Gromiha, Akinori Sarai
Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction. J. Comput. Chem. 21 (11) (2000)
M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Ponraj Prabakaran, Akinori Sarai
ProTherm, version 2.0: thermodynamic database for proteins and mutants. Nucleic Acids Res. 28 (1) (2000)
Akinori Sarai
Methods for Predicting Target Sites of Transcription Factors. German Conference on Bioinformatics (1999)
M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Akinori Sarai
ProTherm: Thermodynamic Database for Proteins and Mutants. Nucleic Acids Res. 27 (1) (1999)
Jianghong An, T. Nakama, Y. Kubota, Akinori Sarai
3DinSight: an integrated relational database and search tool for the structure, function and properties of biomolecules. Bioinform. 14 (2) (1998)