Ozlem Keskin

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 9

Top Topics

Molecular Dynamics

Protein Interaction

Top Venues

J. Chem. Inf. Model.

PLoS Comput. Biol.

Publications

Fatma Cankara, Simge Senyuz, Ahenk Zeynep Sayin, Attila Gürsoy, Ozlem Keskin
DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces. J. Chem. Inf. Model. 64 (13) (2024)
Damla Ovek, Ozlem Keskin, Attila Gürsoy
ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations. J. Chem. Inf. Model. 64 (8) (2024)
Melisa Ece Zeylan, Attila Gursoy, Simge Senyuz, Ozlem Keskin
The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment. BIBM (2023)
Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. Bioinform. 38 (5) (2022)
Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. 38 (21) (2022)
Jackson Weako, Abdullahi Ibrahim Uba, Ozlem Keskin, Attila Gürsoy, Kemal Yelekçi
Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies. Comput. Biol. Chem. 86 (2020)
Cansu Dincer, Tugba Kaya, Ozlem Keskin, Attila Gürsoy, Nurcan Tuncbag
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients. PLoS Comput. Biol. 15 (9) (2019)
E. Sila Ozdemir, Attila Gürsoy, Ozlem Keskin
Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces. Bioinform. 34 (17) (2018)
Farideh Halakou, Attila Gürsoy, Emel Sen Kilic, Ozlem Keskin
Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases. CIBCB (2017)
Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Deniz Demircioglu, Ozlem Keskin, Attila Gürsoy
Modeling Structural Protein Interaction Networks for Betweenness Analysis. ISCIS (2014)
Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. 10 (2) (2014)
Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin
HotRegion: a database of predicted hot spot clusters. Nucleic Acids Res. 40 (Database-Issue) (2012)
Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. J. Chem. Inf. Model. 52 (8) (2012)
Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
HotPoint: hot spot prediction server for protein interfaces. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov
CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy
Interaction prediction and classification of PDZ domains. BMC Bioinform. 11 (2010)
Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings Bioinform. 10 (3) (2009)
Gozde Kar, Attila Gürsoy, Ozlem Keskin
Human Cancer Protein-Protein Interaction Network: A Structural Perspective. PLoS Comput. Biol. 5 (12) (2009)
Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. Bioinform. 25 (12) (2009)
Ibrahim Baris, Aytug Tuncel, Natali Ozber, Ozlem Keskin, I. Halil Kavakli
Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase. PLoS Comput. Biol. 5 (10) (2009)
Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
HotSprint: database of computational hot spots in protein interfaces. Nucleic Acids Res. 36 (Database-Issue) (2008)
Aytug Tuncel, I. Halil Kavakli, Ozlem Keskin
Structure Prediction of Potato Large Subunit ADP - Glucose Pyrophosphorylase. BIOCOMP (2006)
Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy
PRISM: protein interactions by structural matching. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
A. Selim Aytuna, Attila Gürsoy, Ozlem Keskin
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Bioinform. 21 (12) (2005)