Hansaim Lim

Publication Activity (10 Years)

Years Active: 2016-2022
Publications (10 Years): 10

Top Topics

Collaborative Filtering

High Throughput

Biological Data

Protein Interaction

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

PLoS Comput. Biol.

Publications

Yang Liu, Hansaim Lim, Lei Xie
Exploration of chemical space with partial labeled noisy student self-training and self-supervised graph embedding. BMC Bioinform. (3) (2022)
Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. 38 (21) (2022)
Hansaim Lim, Lei Xie
A New Weighted Imputed Neighborhood-Regularized Tri-Factorization One-Class Collaborative Filtering Algorithm: Application to Target Gene Prediction of Transcription Factors. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (1) (2021)
Tian Cai, Hansaim Lim, Kyra Alyssa Abbu, Yue Qiu, Ruth Nussinov, Lei Xie
MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization. J. Chem. Inf. Model. 61 (4) (2021)
Yue Qiu, Tianhuan Lu, Hansaim Lim, Lei Xie
A Bayesian approach to accurate and robust signature detection on LINCS L1000 data. Bioinform. 36 (9) (2020)
Mohamed Ayed, Hansaim Lim, Lei Xie
Biological representation of chemicals using latent target interaction profile. BMC Bioinform. (24) (2019)
Hansaim Lim, Di He, Yue Qiu, Patrycja Krawczuk, Xiaoru Sun, Lei Xie
Rational discovery of dual-indication multi-target PDE/Kinase inhibitor for precision anti-cancer therapy using structural systems pharmacology. PLoS Comput. Biol. 15 (6) (2019)
Hansaim Lim, Lei Xie
Target Gene Prediction of Transcription Factor Using a New Neighborhood-regularized Tri-factorization One-class Collaborative Filtering Algorithm. BCB (2018)
Annie Wang, Hansaim Lim, Shu-Yuan Cheng, Lei Xie
ANTENNA, a Multi-Rank, Multi-Layered Recommender System for Inferring Reliable Drug-Gene-Disease Associations: Repurposing Diazoxide as a Targeted Anti-Cancer Therapy. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Hansaim Lim, Aleksandar Poleksic, Yuan Yao, Hanghang Tong, Di He, Luke Zhuang, Patrick Meng, Lei Xie
Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing. PLoS Comput. Biol. 12 (10) (2016)