Attila Gürsoy

Publication Activity (10 Years)

Years Active: 1991-2024
Publications (10 Years): 9

Top Topics

Molecular Dynamics

Protein Interaction

Top Venues

J. Chem. Inf. Model.

PLoS Comput. Biol.

Publications

Fatma Cankara, Simge Senyuz, Ahenk Zeynep Sayin, Attila Gürsoy, Ozlem Keskin
DiPPI: A Curated Data Set for Drug-like Molecules in Protein-Protein Interfaces. J. Chem. Inf. Model. 64 (13) (2024)
Damla Ovek, Ozlem Keskin, Attila Gürsoy
ProInterVal: Validation of Protein-Protein Interfaces through Learned Interface Representations. J. Chem. Inf. Model. 64 (8) (2024)
Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. Bioinform. 38 (5) (2022)
Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. 38 (21) (2022)
Jackson Weako, Abdullahi Ibrahim Uba, Ozlem Keskin, Attila Gürsoy, Kemal Yelekçi
Identification of potential inhibitors of human methionine aminopeptidase (type II) for cancer therapy: Structure-based virtual screening, ADMET prediction and molecular dynamics studies. Comput. Biol. Chem. 86 (2020)
Waris Gill, Öznur Özkasap, Attila Gürsoy
Intelligent Edge Computing: State-of-the-art Techniques and Applications. SIU (2020)
Cansu Dincer, Tugba Kaya, Ozlem Keskin, Attila Gürsoy, Nurcan Tuncbag
3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients. PLoS Comput. Biol. 15 (9) (2019)
E. Sila Ozdemir, Attila Gürsoy, Ozlem Keskin
Analysis of single amino acid variations in singlet hot spots of protein-protein interfaces. Bioinform. 34 (17) (2018)
Farideh Halakou, Attila Gürsoy, Emel Sen Kilic, Ozlem Keskin
Topological, functional, and structural analyses of protein-protein interaction networks of breast cancer lung and brain metastases. CIBCB (2017)
Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Deniz Demircioglu, Ozlem Keskin, Attila Gürsoy
Modeling Structural Protein Interaction Networks for Betweenness Analysis. ISCIS (2014)
Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. 10 (2) (2014)
Engin Cukuroglu, Attila Gürsoy, Ozlem Keskin
HotRegion: a database of predicted hot spot clusters. Nucleic Acids Res. 40 (Database-Issue) (2012)
Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. J. Chem. Inf. Model. 52 (8) (2012)
Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
HotPoint: hot spot prediction server for protein interfaces. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy
Interaction prediction and classification of PDZ domains. BMC Bioinform. 11 (2010)
Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings Bioinform. 10 (3) (2009)
Gozde Kar, Attila Gürsoy, Ozlem Keskin
Human Cancer Protein-Protein Interaction Network: A Structural Perspective. PLoS Comput. Biol. 5 (12) (2009)
Nurcan Tuncbag, Attila Gürsoy, Ozlem Keskin
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. Bioinform. 25 (12) (2009)
Emre Guney, Nurcan Tuncbag, Ozlem Keskin, Attila Gürsoy
HotSprint: database of computational hot spots in protein interfaces. Nucleic Acids Res. 36 (Database-Issue) (2008)
Omer Ozan Sonmez, Attila Gürsoy
A Novel Economic-Based Scheduling Heuristic for Computational Grids. Int. J. High Perform. Comput. Appl. 21 (1) (2007)
Osman N. Yogurtçu, Engin Erzin, Attila Gürsoy
Extracting Gene Regulation Information from Microarray Time-Series Data Using Hidden Markov Models. ISCIS (2006)
Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy
PRISM: protein interactions by structural matching. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
A. Selim Aytuna, Attila Gürsoy, Ozlem Keskin
Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces. Bioinform. 21 (12) (2005)
Ali Kemal Sinop, Tolga Abaci, Ümit Akkus, Attila Gürsoy, Ugur Güdükbay
PHR: A Parallel Hierarchical Radiosity System with Dynamic Load Balancing. J. Supercomput. 31 (3) (2005)
Omer Ozan Sonmez, Attila Gürsoy
Comparison of Pricing Policies for a Computational Grid Market. PPAM (2005)
Ahmet Palazoglu, Attila Gürsoy, Yaman Arkun, Burak Erman
Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis. J. Comput. Biol. 11 (6) (2004)
Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, A. Ayaz, Gürcan Gülesir, Gurkan Nisanci, Rengül Çetin-Atalay
An ontology for collaborative construction and analysis of cellular pathways. Bioinform. 20 (3) (2004)
Attila Gürsoy, Laxmikant V. Kalé
Performance and modularity benefits of message-driven execution. J. Parallel Distributed Comput. 64 (4) (2004)
A. Kocatas, Attila Gürsoy, Rengül Çetin-Atalay
Application of Data Mining Techniques to Protein-Protein Interaction Prediction. ISCIS (2003)
Attila Gürsoy
Data Decomposition for Parallel K-means Clustering. PPAM (2003)
Emek Demir, Ozgun Babur, Ugur Dogrusöz, Attila Gürsoy, Gurkan Nisanci, Rengül Çetin-Atalay, Mehmet Ozturk
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways. Bioinform. 18 (7) (2002)
Attila Gürsoy, Ilker Cengiz
Parallel Pruning for K-Means Clustering on Shared Memory Architectures. Euro-Par (2001)
Attila Gürsoy, Murat Atun
Neighbourhood Preserving Load Balancing: A Self-Organizing Approach. Euro-Par (2000)
R. Sireli, Attila Gürsoy
Parallel Hierarchical Radiosity. PDPTA (1999)
Attila Gürsoy, Ilker Cengiz
Mechanisms for Programming SMP Clusters. PDPTA (1999)
Attila Gürsoy, Laxmikant V. Kalé
Simulating Message-Driven Programs. ICPP, Vol. 3 (1996)
Mark T. Nelson, William Humphrey, Attila Gürsoy, Andrew Dalke, Laxmikant V. Kalé, Robert D. Skeel, Klaus Schulten
NAMD: a Parallel, Object-Oriented Molecular Dynamics Program. Int. J. High Perform. Comput. Appl. 10 (4) (1996)
Laxmikant V. Kalé, Attila Gürsoy
Modularity, Reuse and Efficiency with Message-Driven Libraries. PPSC (1995)
Attila Gürsoy, Laxmikant V. Kalé
Dagger: Combining Benefits of Synchronous and Asynchronous Communication Styles. IPPS (1994)
Attila Gürsoy, Laxmikant V. Kalé
High level support for divide-and-conquer parallelism. SC (1991)