Aleksandar Poleksic

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 7

Top Topics

Protein Structure Alignment

Improved Algorithm

Multiple Sequence Alignments

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Aleksandar Poleksic
Fast Dual-Regularized Autoencoder for Sparse Biological Data. CoRR (2024)
Aleksandar Poleksic
Overcoming Sparseness of Biomedical Networks to Identify Drug Repositioning Candidates. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Aleksandar Poleksic, Lei Xie
Predicting serious rare adverse reactions of novel chemicals. Bioinform. 34 (16) (2018)
Aleksandar Poleksic, Carson Turner, Rishabh Dalal, Paul Gray, Lei Xie
Mining FDA resources to compute population-specific frequencies of adverse drug reactions. BIBM (2017)
Hansaim Lim, Aleksandar Poleksic, Yuan Yao, Hanghang Tong, Di He, Luke Zhuang, Patrick Meng, Lei Xie
Large-Scale Off-Target Identification Using Fast and Accurate Dual Regularized One-Class Collaborative Filtering and Its Application to Drug Repurposing. PLoS Comput. Biol. 12 (10) (2016)
Aleksandar Poleksic
Towards a better measure of protein 3D model quality. EIT (2015)
Aleksandar Poleksic
A polynomial time algorithm for computing the area under a GDT curve. Algorithms Mol. Biol. 10 (2015)
Aleksandar Poleksic, Paul Gray
Utilizing twilight zone sequence similarities to increase the accuracy of protein 3D structure comparison. BCB (2014)
Aleksandar Poleksic
Improved Algorithms for Matching r-Separated Sets with Applications to Protein Structure Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 10 (1) (2013)
Aleksandar Poleksic
On Complexity of Protein Structure Alignment Problem under Distance Constraint. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (2) (2012)
Mauricio Arriagada, Aleksandar Poleksic
Protein Structure Alignment: Is There Room for Improvement? CISIS (2012)
Harald Kattnig, Aleksandar Poleksic
Visualizing Protein Structural Superpositions and Alignments with StructAlignViewer. IV (2012)
Aleksandar Poleksic
Optimizing a Widely Used Protein Structure Alignment Measure in Expected Polynomial Time. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Aleksandar Poleksic
Optimal Pairwise Alignment of Fixed protein Structures in Subquadratic Time. J. Bioinform. Comput. Biol. 9 (3) (2011)
Aleksandar Poleksic
Protein Structure Alignment in Subquadratic Time. BIONETICS (2010)
Aleksandar Poleksic
Island method for estimating the statistical significance of profile-profile alignment scores. BMC Bioinform. 10 (2009)
Aleksandar Poleksic
Algorithms for optimal protein structure alignment. Bioinform. 25 (21) (2009)
Aleksandar Poleksic, Mark A. Fienup, Joseph F. Danzer, Derek A. Debe
A Different Look at the Quality of Modeled Three-Dimensional protein Structures. J. Bioinform. Comput. Biol. 6 (2) (2008)
Aleksandar Poleksic, Mark A. Fienup
Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms. Bioinform. 24 (9) (2008)
Aleksandar Poleksic, Joseph F. Danzer
Protein side-chain modeling using a combination of knowledge and energy based approaches. BIOCOMP (2007)
Aleksandar Poleksic, Joseph F. Danzer, Kevin Hambly, Derek A. Debe
Convergent Island Statistics: a fast method for determining local alignment score significance. Bioinform. 21 (12) (2005)