Kenji Mizuguchi

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 12

Top Topics

Knowledge Discovery

Structural Properties

Top Venues

J. Chem. Inf. Model.

Frontiers Bioinform.

Publications

Chihiro Higuchi, Agustin Martin-Morales, Ai Oya, Mai Inoue, Misako Ikkai, Kenji Mizuguchi, Michihiro Araki
Toward the Construction of a Knowledge Graph from Japanese Food Ontology for the Prevention of Frailty. IJCKG (Workshop/Poster/Demo) (2023)
Kyohei Koyama, Kosuke Hashimoto, Chioko Nagao, Kenji Mizuguchi
Attention network for predicting T-cell receptor-peptide binding can associate attention with interpretable protein structural properties. Frontiers Bioinform. 3 (2023)
Attayeb Mohsen, Yi-An Chen, Rodolfo S. Allendes Osorio, Chihiro Higuchi, Kenji Mizuguchi
Snaq: A Dynamic Snakemake Pipeline for Microbiome Data Analysis With QIIME2. Frontiers Bioinform. 2 (2022)
Yi-An Chen, Rodolfo S. Allendes Osorio, Kenji Mizuguchi
TargetMine 2022: a new vision into drug target analysis. Bioinform. 38 (18) (2022)
Saransh Gupta, Haswanth Vundavilli, Rodolfo S. Allendes Osorio, Mari N. Itoh, Attayeb Mohsen, Aniruddha Datta, Kenji Mizuguchi, Lokesh P. Tripathi
Integrative Network Modeling Highlights the Crucial Roles of Rho-GDI Signaling Pathway in the Progression of non-Small Cell Lung Cancer. IEEE J. Biomed. Health Informatics 26 (9) (2022)
Attayeb Mohsen, Jonguk Park, Yi-An Chen, Hitoshi Kawashima, Kenji Mizuguchi
Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks. BMC Bioinform. 20 (1) (2019)
Rodolfo S. Allendes Osorio, Lokesh P. Tripathi, Kenji Mizuguchi
CLINE: a web-tool for the comparison of biological dendrogram structures. BMC Bioinform. 20 (1) (2019)
Yi-An Chen, Erika Yogo, Naoko Kurihara, Tomoshige Ohno, Chihiro Higuchi, Masatomo Rokushima, Kenji Mizuguchi
Assessing drug target suitability using TargetMine. F1000Research 8 (2019)
Tsuyoshi Esaki, Rikiya Ohashi, Reiko Watanabe, Yayoi Natsume-Kitatani, Hitoshi Kawashima, Chioko Nagao, Kenji Mizuguchi
Computational Model To Predict the Fraction of Unbound Drug in the Brain. J. Chem. Inf. Model. 59 (7) (2019)
Philip Prathipati, Chioko Nagao, Shandar Ahmad, Kenji Mizuguchi
Improved pose and affinity predictions using different protocols tailored on the basis of data availability. J. Comput. Aided Mol. Des. 30 (9) (2016)
Philip Prathipati, Kenji Mizuguchi
Integration of Ligand and Structure Based Approaches for CSAR-2014. J. Chem. Inf. Model. 56 (6) (2016)
Yi-An Chen, Lokesh P. Tripathi, Kenji Mizuguchi
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. Database J. Biol. Databases Curation 2016 (2016)
Maori Ito, Shin-ichi Nakagawa, Kenji Mizuguchi, Takashi Okumura
Integration of Disease Entries Across OMIM, Orphanet, and a Proprietary Knowledge Base. IEA/AIE (2015)
Jun-Ichi Ito, Kazuyoshi Ikeda, Kazunori D. Yamada, Kenji Mizuguchi, Kentaro Tomii
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs. Nucleic Acids Res. 43 (Database-Issue) (2015)
Yoichi Murakami, Kenji Mizuguchi
Homology-based prediction of interactions between proteins using Averaged One-Dependence Estimators. BMC Bioinform. 15 (2014)
Johan Nyström-Persson, Yoshinobu Igarashi, Maori Ito, Mizuki Morita, Noriyuki Nakatsu, Hiroshi Yamada, Kenji Mizuguchi
Toxygates: interactive toxicity analysis on a hybrid microarray and linked data platform. Bioinform. 29 (23) (2013)
Gabriel Keeble-Gagnère, Johan Nyström-Persson, Matthew I. Bellgard, Kenji Mizuguchi
An Open Framework for Extensible Multi-stage Bioinformatics Software. PRIB (2012)
Gabriel Keeble-Gagnère, Johan Nyström-Persson, Matthew I. Bellgard, Kenji Mizuguchi
An Open Framework for Extensible Multi-Stage Bioinformatics Software CoRR (2012)
Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad
Prediction of dinucleotide-specific RNA-binding sites in proteins. BMC Bioinform. 12 (S-13) (2011)
Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paudel, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi
Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins. BMC Bioinform. 11 (2010)
Yoichi Murakami, Kenji Mizuguchi
Applying the Naïve Bayes classifier with kernel density estimation to the prediction of protein-protein interaction sites. Bioinform. 26 (15) (2010)
Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov
CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Kenji Mizuguchi, M. Sele, Maria Vittoria Cubellis
Environment specific substitution tables for thermophilic proteins. BMC Bioinform. 8 (S-1) (2007)
Younes Mokrab, Kenji Mizuguchi
Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling. BMC Bioinform. 6 (S-3) (2005)
Lucy A. Stebbings, Kenji Mizuguchi
HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Riccardo Bennett-Lovsey, Sarah E. Hart, Hiroki Shirai, Kenji Mizuguchi
The SWIB and the MDM2 domains are homologous and share a common fold. Bioinform. 18 (4) (2002)
Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, Jiye Shi, Hiroki Shirai, Tom L. Blundell
HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. Bioinform. 17 (8) (2001)
Kenji Mizuguchi, Tom L. Blundell
Analysis of conservation and substitutions of secondary structure elements within protein superfamilies. Bioinform. 16 (12) (2000)
Kenji Mizuguchi, Charlotte M. Deane, Tom L. Blundell, Mark S. Johnson, John P. Overington
JOY: protein sequence-structure representation and analysis. Bioinform. 14 (7) (1998)