Shandar Ahmad

Publication Activity (10 Years)

Years Active: 2002-2024
Publications (10 Years): 5

Top Topics

Natural Gradient

Top Venues

Frontiers Neuroinformatics

Comput. Biol. Medicine

Comput. Biol. Chem.

J. Comput. Aided Mol. Des.

Publications

Akash Ajay, Tina Begum, Ajay Arya, Krishan Kumar, Shandar Ahmad
Global and local genomic features together modulate the spontaneous single nucleotide mutation rate. Comput. Biol. Chem. 112 (2024)
Hanif Amal Robbani, Alhadi Bustamam, Risman Adnan, Shandar Ahmad
On Performance and Calibration of Natural Gradient Langevin Dynamics. IEEE Access 11 (2023)
Sucheta Chauhan, Lovekesh Vig, Michele De Filippo De Grazia, Maurizio Corbetta, Shandar Ahmad, Marco Zorzi
A Comparison of Shallow and Deep Learning Methods for Predicting Cognitive Performance of Stroke Patients From MRI Lesion Images. Frontiers Neuroinformatics 13 (2019)
Sucheta Chauhan, Lovekesh Vig, Shandar Ahmad
ECG anomaly class identification using LSTM and error profile modeling. Comput. Biol. Medicine 109 (2019)
Philip Prathipati, Chioko Nagao, Shandar Ahmad, Kenji Mizuguchi
Improved pose and affinity predictions using different protocols tailored on the basis of data availability. J. Comput. Aided Mol. Des. 30 (9) (2016)
Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad
Prediction of dinucleotide-specific RNA-binding sites in proteins. BMC Bioinform. 12 (S-13) (2011)
Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paudel, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi
Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins. BMC Bioinform. 11 (2010)
Adeel Malik, Ahmad Firoz, Vivekanand Jha, Shandar Ahmad
PROCARB: A Database of Known and Modelled Carbohydrate-Binding Protein Structures with Sequence-Based Prediction Tools. Adv. Bioinformatics 2010 (2010)
Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov
CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Michael Fernández, Shandar Ahmad, Akinori Sarai
Proteochemometric Recognition of Stable Kinase Inhibition Complexes Using Topological Autocorrelation and Support Vector Machines. J. Chem. Inf. Model. 50 (6) (2010)
Shandar Ahmad, Madhu Chetty, Bertil Schmidt
Pattern Recognition in Bioinformatics. Pattern Recognit. Lett. 31 (14) (2010)
Michael Fernández, Akinori Sarai, Shandar Ahmad
Recognition of Drug-Target Interaction Patterns using Genetic Algorithm-optimized Bayesian-regularized Neural Networks and Support Vector Machines. SMC (2009)
Shandar Ahmad
Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products. ISBRA (2008)
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
Neural network based prediction of protein structure and Function: Comparison with other machine learning methods. IJCNN (2008)
Shandar Ahmad, Zulfiqar Ahmad
ATP-binding site as a further application of neural networks to residue level prediction. IJCNN (2008)
Shandar Ahmad
Dynamic Outlier Exclusion Training Algorithm for Sequence Based Predictions in Proteins Using Neural Network. PRIB (2007)
Marcos J. Araúzo-Bravo, Shandar Ahmad, Akinori Sarai
Dimensionality of amino acid space and solvent accessibility prediction with neural networks. Comput. Biol. Chem. 30 (2) (2006)
Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai
ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
Application of residue distribution along the sequence for discriminating outer membrane proteins. Comput. Biol. Chem. 29 (2) (2005)
Shandar Ahmad, Akinori Sarai
PSSM-based prediction of DNA binding sites in proteins. BMC Bioinform. 6 (2005)
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
TMBETA-NET: discrimination and prediction of membrane spanning ß-strands in outer membrane proteins. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, Akinori Sarai
: Database and tool for solvent accessibility representation in proteins. BMC Bioinform. 5 (2004)
M. Michael Gromiha, Shandar Ahmad, Makiko Suwa
Neural network-based prediction of transmembrane -strand segments in outer membrane proteins. J. Comput. Chem. 25 (5) (2004)
Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information. Bioinform. 20 (4) (2004)
Shandar Ahmad, Akinori Sarai
Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Shandar Ahmad, M. Michael Gromiha
Design and training of a neural network for predicting the solvent accessibility of proteins. J. Comput. Chem. 24 (11) (2003)
Shandar Ahmad, M. Michael Gromiha, Akinori Sarai
RVP-net: online prediction of real valued accessible surface area of proteins from single sequences. Bioinform. 19 (14) (2003)
Shandar Ahmad, M. Michael Gromiha
NETASA: neural network based prediction of solvent accessibility. Bioinform. 18 (6) (2002)