Hidetoshi Kono

Publication Activity (10 Years)

Years Active: 1999-2022
Publications (10 Years): 4

Top Topics

Agent Based Models

Generalized Belief Propagation

Sampling Strategy

Top Venues

PLoS Comput. Biol.

J. Comput. Chem.

Publications

Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono
Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex. PLoS Comput. Biol. 18 (1) (2022)
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
Correction: Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA. PLoS Comput. Biol. 15 (10) (2019)
Hidetoshi Kono, Shun Sakuraba, Hisashi Ishida
Free energy profiles for unwrapping the outer superhelical turn of nucleosomal DNA. PLoS Comput. Biol. 14 (3) (2018)
Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono
H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation. PLoS Comput. Biol. 12 (3) (2016)
Jinzen Ikebe, Shun Sakuraba, Hidetoshi Kono
Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules. J. Comput. Chem. 35 (1) (2014)
Hidetoshi Kono, Tomo Yuasa, Shinya Nishiue, Kei Yura
coliSNP database server mapping nsSNPs on protein structures. Nucleic Acids Res. 36 (Database-Issue) (2008)
Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai
Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. APBC (2006)
Shandar Ahmad, Hidetoshi Kono, Marcos J. Araúzo-Bravo, Akinori Sarai
ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Sheldon Park, Hidetoshi Kono, Wei Wang, Eric T. Boder, Jeffery G. Saven
Progress in the development and application of computational methods for probabilistic protein design. Comput. Chem. Eng. 29 (3) (2005)
Akinori Sarai, Jorg Siebers, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
Integration of Bioinformatics and Computational Biology to Understand Protein-dna Recognition Mechanism. J. Bioinform. Comput. Biol. 3 (1) (2005)
Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono
Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors. APBC (2004)
Ponraj Prabakaran, Jianghong An, M. Michael Gromiha, Samuel Selvaraj, Hatsuho Uedaira, Hidetoshi Kono, Akinori Sarai
Thermodynamic database for protein-nucleic acid interactions (ProNIT). Bioinform. 17 (11) (2001)
Kenji Sayano, Hidetoshi Kono, M. Michael Gromiha, Akinori Sarai
Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction. J. Comput. Chem. 21 (11) (2000)
M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Ponraj Prabakaran, Akinori Sarai
ProTherm, version 2.0: thermodynamic database for proteins and mutants. Nucleic Acids Res. 28 (1) (2000)
M. Michael Gromiha, Jianghong An, Hidetoshi Kono, Motohisa Oobatake, Hatsuho Uedaira, Akinori Sarai
ProTherm: Thermodynamic Database for Proteins and Mutants. Nucleic Acids Res. 27 (1) (1999)