Kota Kasahara

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 7

Top Topics

Energy Landscape

Molecular Dynamics

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Shun Sakuraba, Qilin Xie, Kota Kasahara, Junichi Iwakiri, Hidetoshi Kono
Extended ensemble simulations of a SARS-CoV-2 nsp1-5'-UTR complex. PLoS Comput. Biol. 18 (1) (2022)
Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. J. Chem. Inf. Model. 60 (10) (2020)
Tomonori Hayami, Junichi Higo, Haruki Nakamura, Kota Kasahara
Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly. J. Comput. Chem. 40 (28) (2019)
Tomonori Hayami, Kota Kasahara, Haruki Nakamura, Junichi Higo
Molecular dynamics coupled with a virtual system for effective conformational sampling. J. Comput. Chem. 39 (19) (2018)
Hasitha Muthumala Waidyasooriya, Masanori Hariyama, Kota Kasahara
An FPGA Accelerator for Molecular Dynamics Simulation Using OpenCL. Int. J. Networked Distributed Comput. 5 (1) (2017)
Kota Kasahara, Neetha Mohan, Ikuo Fukuda, Haruki Nakamura
mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories. Bioinform. 32 (16) (2016)
Hasitha Muthumala Waidyasooriya, Masanori Hariyama, Kota Kasahara
Architecture of an FPGA accelerator for molecular dynamics simulation using OpenCL. ICIS (2016)
Yuji Takeuchi, Shin-Hong Kim, Kenichi Takemasa, Kenji Kiuchi, Kazuki Nagata, Kota Kasahara, Takuya Okudaira, Tatsuya Ichimura, Masahiro Kanamaru, Kouya Moriuchi, Ren Senzaki, Shunsuke Yagi, Hirokazu Ikeda, Shuji Matsuura, Takehiko Wada, Takuo Yoshida, Shota Komura, Keisuke Orikasa, Ryuta Hirose, Yukihiro Kato, Masashi Hazumi, Yasuo Arai, Shigetomo Shiki, Masahiro Ukibe, Go Fujii, Tetsuya Adachi, Masataka Ohkubo, Erik Ramberg, Jonghee Yoo, Mark Kozlovsky, Paul Rubinov, Dmitri Sergatskov, Hirokazu Ishino, Atsuko Kibayashi, Satoru Mima, Soo-Bong Kim
Development of Superconducting Tunnel Junction detectors as a far-infrared photon-by-photon spectrometer for neutrino decay search. I2MTC (2015)
Junichi Higo, Bhaskar Dasgupta, Tadaaki Mashimo, Kota Kasahara, Yoshifumi Fukunishi, Haruki Nakamura
Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking. J. Comput. Chem. 36 (20) (2015)
Kota Kasahara, Kengo Kinoshita
GIANT: pattern analysis of molecular interactions in 3D structures of protein-small ligand complexes. BMC Bioinform. 15 (2014)
Kota Kasahara, Matsuyuki Shirota, Kengo Kinoshita
Comprehensive Classification and Diversity Assessment of Atomic Contacts in Protein-Small Ligand Interactions. J. Chem. Inf. Model. 53 (1) (2013)
Kota Kasahara, Kengo Kinoshita, Toshihisa Takagi
Ligand-binding site prediction of proteins based on known fragment-fragment interactions. Bioinform. 26 (12) (2010)