Junichi Higo

Publication Activity (10 Years)

Years Active: 1994-2021
Publications (10 Years): 6

Top Topics

Protein Interaction

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Kei Moritsugu, Koh Takeuchi, Narutoshi Kamiya, Junichi Higo, Isao Yasumatsu, Yoshifumi Fukunishi, Ikuo Fukuda
Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation. J. Chem. Inf. Model. 61 (4) (2021)
Junichi Higo, Hajime Takashima, Yoshifumi Fukunishi, Atsushi Yoshimori
Generalized-ensemble method study: A helix-mimetic compound inhibits protein-protein interaction by long-range and short-range intermolecular interactions. J. Comput. Chem. 42 (14) (2021)
Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura
Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. J. Chem. Inf. Model. 60 (10) (2020)
Tomonori Hayami, Junichi Higo, Haruki Nakamura, Kota Kasahara
Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly. J. Comput. Chem. 40 (28) (2019)
Tomonori Hayami, Kota Kasahara, Haruki Nakamura, Junichi Higo
Molecular dynamics coupled with a virtual system for effective conformational sampling. J. Comput. Chem. 39 (19) (2018)
Shinji Iida, Tadaaki Mashimo, Takashi Kurosawa, Hironobu Hojo, Hiroya Muta, Yuji Goto, Yoshifumi Fukunishi, Haruki Nakamura, Junichi Higo
Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling. J. Comput. Chem. 37 (31) (2016)
Junichi Higo, Bhaskar Dasgupta, Tadaaki Mashimo, Kota Kasahara, Yoshifumi Fukunishi, Haruki Nakamura
Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking. J. Comput. Chem. 36 (20) (2015)
Hung Nguyen, Tien Tran, Yoshifumi Fukunishi, Junichi Higo, Haruki Nakamura, Ly Le
Computational Study of Drug Binding Affinity to Influenza A Neuraminidase Using Smooth Reaction Path Generation (SRPG) Method. J. Chem. Inf. Model. 55 (9) (2015)
Jinzen Ikebe, Koji Umezawa, Narutoshi Kamiya, Takanori Sugihara, Yasushige Yonezawa, Yu Takano, Haruki Nakamura, Junichi Higo
Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water. J. Comput. Chem. 32 (7) (2011)
Junichi Higo
Sampling of Protein Conformations with Computers to Predict the Native Structure. ISHPC (2005)
Mitsunori Takano, Junichi Higo, Hironori K. Nakamura, Masaki Sasai
On the model granularity to simulate protein dynamics: A biological physics view on biomolecular computing. Nat. Comput. 3 (4) (2004)
Mitsunori Takano, Hironori K. Nakamura, Junichi Higo, Masaki Sasai
Molecular dynamics simulation using coarse-grained model to study protein function and beyond. IEEE Congress on Evolutionary Computation (2003)
Kazuyoshi Ikeda, Oxana V. Galzitskaya, Haruki Nakamura, Junichi Higo
beta-Hairpins, alpha-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal beta-hairpin of SH3 domain. J. Comput. Chem. 24 (3) (2003)
Junichi Higo, Masayoshi Nakasako
Hydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: On the correlation between crystal water sites, solvent density, and solvent dipole. J. Comput. Chem. 23 (14) (2002)
Satoshi Ono, Masataka Kuroda, Junichi Higo, Nobuyuki Nakajima, Haruki Nakamura
Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations. J. Comput. Chem. 23 (4) (2002)
Junichi Higo, Yasunobu Sugimoto, Katsuzo Wakabayashi, Haruki Nakamura
Collective motions of myosin head derived from backbone molecular dynamics and combination with X-ray solution scattering data. J. Comput. Chem. 22 (16) (2001)
Narutoshi Kamiya, Junichi Higo
Repeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules. J. Comput. Chem. 22 (10) (2001)
Satoshi Ono, Nobuyuki Nakajima, Junichi Higo, Haruki Nakamura
Peptide free-energy profile is strongly dependent on the force field: Comparison of C96 and AMBER95. J. Comput. Chem. 21 (9) (2000)
Shigeru Endo, Junichi Higo, Kuniaki Nagayama, Hiroshi Wako
New implementation of and the modeling by the extended simulated annealing process to structures of T4 lysozyme mutants at the 86th residue. J. Comput. Chem. 17 (4) (1996)
Junichi Higo, Shigeru Endo, Kuniaki Nagayama, Tomoyoshi Ito, Toshiyuki Fukushige, Toshikazu Ebisuzaki, Daiichiro Sugimoto, Hiroo Miyagawa, Kunihiro Kitamura, Junichiro Makino
Application of a High-Performance, Special-Purpose Computer, GRAPE-2A, to Molecular Dynamics. J. Comput. Chem. 15 (12) (1994)
Junichi Higo, Mariko Yamaki, Michiru Hogyoku, Takuya Takahashi, Shigeru Endo, Kuniaki Nagayama
Stability of Two-Dimensional Crystalline Aggregates of a PRotein Studied by Molecular Dynamics. J. Comput. Chem. 15 (11) (1994)