Multicanonical Monte Carlo calculation of the free-energy map of the base-amino acid interaction.
Kenji SayanoHidetoshi KonoM. Michael GromihaAkinori SaraiPublished in: J. Comput. Chem. (2000)
Keyphrases
- monte carlo
- free energy
- amino acids
- protein sequences
- matrix inversion
- markov chain
- importance sampling
- fixed point
- upper bound
- competitive learning
- monte carlo tree search
- belief propagation
- particle filter
- secondary structure
- protein structure
- posterior distribution
- approximate inference
- maximum a posteriori
- pairwise
- dynamic programming