Takaharu Mori

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 4

Top Topics

Theoretical Analysis

Molecular Dynamics

Parallel Implementation

Top Venues

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Isseki Yu, Takaharu Mori, Daisuke Matsuoka, Donatas Surblys, Yuji Sugita
SPANA: Spatial decomposition analysis for cellular-scale molecular dynamics simulations. J. Comput. Chem. 45 (8) (2024)
Takaharu Mori, Genki Terashi, Daisuke Matsuoka, Daisuke Kihara, Yuji Sugita
Efficient Flexible Fitting Refinement with Automatic Error Fixing for De Novo Structure Modeling from Cryo-EM Density Maps. J. Chem. Inf. Model. 61 (7) (2021)
Chigusa Kobayashi, Jaewoon Jung, Yasuhiro Matsunaga, Takaharu Mori, Tadashi Ando, Koichi Tamura, Motoshi Kamiya, Yuji Sugita
GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms. J. Comput. Chem. 38 (25) (2017)
Osamu Miyashita, Chigusa Kobayashi, Takaharu Mori, Yuji Sugita, Florence Tama
Flexible fitting to cryo-EM density map using ensemble molecular dynamics simulations. J. Comput. Chem. 38 (16) (2017)
Jaewoon Jung, Takaharu Mori, Yuji Sugita
Midpoint cell method for hybrid (MPI+OpenMP) parallelization of molecular dynamics simulations. J. Comput. Chem. 35 (14) (2014)
Jaewoon Jung, Takaharu Mori, Yuji Sugita
Efficient lookup table using a linear function of inverse distance squared. J. Comput. Chem. 34 (28) (2013)
Takaharu Mori, Fumiko Ogushi, Yuji Sugita
Analysis of lipid surface area in protein-membrane systems combining voronoi tessellation and monte carlo integration methods. J. Comput. Chem. 33 (3) (2012)
Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paudel, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi
Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins. BMC Bioinform. 11 (2010)