Nir Ben-Tal

Publication Activity (10 Years)

Years Active: 2002-2021
Publications (10 Years): 6

Top Topics

Amino Acid Sequences

Protein Structural

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Maria Littmann, Katharina Selig, Liel Cohen-Lavi, Yotam Frank, Peter Hönigschmid, Evans Kataka, Anja Mösch, Kun Qian, Avihai Ron, Sebastian Schmid, Adam Sorbie, Liran Szlak, Ayana Dagan-Wiener, Nir Ben-Tal, Masha Y. Niv, Daniel Razansky, Björn W. Schuller, Donna P. Ankerst, Tomer Hertz, Burkhard Rost
Validity of machine learning in biology and medicine increased through collaborations across fields of expertise. Nat. Mach. Intell. 2 (1) (2020)
Ludovica Montanucci, Emidio Capriotti, Yotam Frank, Nir Ben-Tal, Piero Fariselli
DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations. BMC Bioinform. (14) (2019)
Ludovica Montanucci, Pier Luigi Martelli, Nir Ben-Tal, Piero Fariselli
A natural upper bound to the accuracy of predicting protein stability changes upon mutations. Bioinform. 35 (9) (2019)
Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Matthew A. Oberhardt, Raphy Zarecki, Leah Reshef, Fangfang Xia, Miquel Duran-Frigola, Rachel Schreiber, Christopher S. Henry, Nir Ben-Tal, Daniel J. Dwyer, Uri Gophna, Eytan Ruppin
. PLoS Comput. Biol. 12 (1) (2016)
Aya Narunsky, Haim Ashkenazy, Rachel Kolodny, Nir Ben-Tal
Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations. BMC Bioinform. 16 (S-3) (2015)
Seren Soner, Pemra Ozbek, José Ignacio Garzón, Nir Ben-Tal, Turkan Haliloglu
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics. PLoS Comput. Biol. 11 (10) (2015)
Yana Gofman, Charlotta Schärfe, Debora S. Marks, Turkan Haliloglu, Nir Ben-Tal
Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel. PLoS Comput. Biol. 10 (12) (2014)
Aya Narunsky, Nir Ben-Tal
ConTemplate: exploiting the protein databank to propose ensemble of conformations of a query protein of known structure. BMC Bioinform. 15 (S-3) (2014)
Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost
PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Nir Ben-Tal
Editorial. Bioinform. 29 (13) (2013)
James A. R. Dalton, Ori Kalid, Maya Schushan, Nir Ben-Tal, Jordi Villà-Freixa
New Model of Cystic Fibrosis Transmembrane Conductance Regulator Proposes Active Channel-like Conformation. J. Chem. Inf. Model. 52 (7) (2012)
Yana Gofman, Turkan Haliloglu, Nir Ben-Tal
Monte Carlo simulations of peptide-membrane interactions with the MCPep web server. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Gilad Wainreb, Lior Wolf, Haim Ashkenazy, Yves Dehouck, Nir Ben-Tal
Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site. Bioinform. 27 (23) (2011)
Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Matan Kalman, Nir Ben-Tal
Quality assessment of protein model-structures using evolutionary conservation. Bioinform. 26 (10) (2010)
Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, Nir Ben-Tal
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Guy Nimrod, Maya Schushan, András Szilágyi, Christina S. Leslie, Nir Ben-Tal
iDBPs: a web server for the identification of DNA binding proteins. Bioinform. 26 (5) (2010)
Ori Kalid, Nir Ben-Tal
Study of MDM2 Binding to p53-Analogues: Affinity, Helicity, and Applicability to Drug Design. J. Chem. Inf. Model. 49 (4) (2009)
Ofir Goldenberg, Elana Erez, Guy Nimrod, Nir Ben-Tal
The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures. Nucleic Acids Res. 37 (Database-Issue) (2009)
Turkan Haliloglu, Nir Ben-Tal
Cooperative Transition between Open and Closed Conformations in Potassium Channels. PLoS Comput. Biol. 4 (8) (2008)
Angelika Fuchs, Antonio J. Martin-Galiano, Matan Kalman, Sarel Jacob Fleishman, Nir Ben-Tal, Dmitrij Frishman
Co-evolving residues in membrane proteins. Bioinform. 23 (24) (2007)
Angela Enosh, Sarel Jacob Fleishman, Nir Ben-Tal, Dan Halperin
Prediction and simulation of motion in pairs of transmembrane alpha-helices. Bioinform. 23 (2) (2007)
Roee Gutman, Carine Berezin, Roy Wollman, Yossi Rosenberg, Nir Ben-Tal
QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Meytal Landau, Itay Mayrose, Yossi Rosenberg, Fabian Glaser, Eric Martz, Tal Pupko, Nir Ben-Tal
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal, Tal Pupko
identification of functional regions in proteins. ISMB (Supplement of Bioinformatics) (2005)
Angela Enosh, Sarel Jacob Fleishman, Nir Ben-Tal, Dan Halperin
Assigning transmembrane segments to helices in intermediate-resolution structures. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal
ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinform. 20 (8) (2004)
Fabian Glaser, Tal Pupko, Inbal Paz, Rachel E. Bell, Dalit Bechor-Shental, Eric Martz, Nir Ben-Tal
ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information. Bioinform. 19 (1) (2003)
Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal
Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. ISMB (2002)