Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations.
Aya NarunskyHaim AshkenazyRachel KolodnyNir Ben-TalPublished in: BMC Bioinform. (2015)
Keyphrases
- protein structure
- protein folding
- protein structure prediction
- secondary structure
- experimentally determined
- amino acids
- protein sequences
- low energy
- amino acid sequences
- protein function
- molecular biology
- detection algorithm
- coarse grained
- object detection
- detection method
- structural motifs
- molecular dynamics
- search space
- detection rate
- false positives
- computational methods
- false alarms
- protein protein
- graph theory
- search algorithm