ConTemplate: exploiting the protein databank to propose ensemble of conformations of a query protein of known structure.
Aya NarunskyNir Ben-TalPublished in: BMC Bioinform. (2014)
Keyphrases
- protein structure
- amino acids
- protein folding
- protein structure prediction
- contact map
- structural motifs
- protein sequences
- physicochemical properties
- molecular structures
- sequence similarity
- protein structural
- database
- query expansion
- sequence alignment
- secondary structure
- response time
- user queries
- drug discovery
- sequence databases
- sequence analysis
- query processing
- protein function
- training set
- protein interaction data
- amino acid sequences
- neural network
- database systems
- subcellular localization
- keywords
- relevance feedback
- low energy
- protein protein interactions
- fine grained
- mass spectrometry
- range queries