Pemra Ozbek

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 9

Top Topics

Colorectal Cancer

Molecular Dynamics

Cross Correlation

Protein Structure

Top Venues

Comput. Biol. Chem.

J. Comput. Aided Mol. Des.

Nucleic Acids Res.

Comput. Biol. Medicine

Publications

Metin Yazar, Pemra Ozbek
pathogenicity methods on cancer-related variants. Comput. Biol. Medicine 145 (2022)
Hande Beklen, Sema Arslan, Gizem Gulfidan, Beste Turanli, Pemra Ozbek, Betül Karademir Yilmaz, Kazim Yalçin Arga
Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers. Frontiers Bioinform. 1 (2021)
Elif Naz Bingöl, Onur Serçinoglu, Pemra Ozbek
Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations. J. Chem. Inf. Model. 61 (5) (2021)
Asuman Bunsuz, Onur Serçinoglu, Pemra Ozbek
Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles. Comput. Biol. Chem. 84 (2020)
Metin Yazar, Pemra Ozbek
Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy. J. Comput. Aided Mol. Des. 34 (9) (2020)
Rasim Murat Aydinkal, Onur Serçinoglu, Pemra Ozbek
ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Onur Serçinoglu, Pemra Ozbek
gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Onur Serçinoglu, Gülin Özcan, Zeynep Kutlu Kabas, Pemra Ozbek
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis. J. Comput. Aided Mol. Des. 30 (7) (2016)
Pemra Ozbek
Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study. Comput. Biol. Chem. 62 (2016)
Seren Soner, Pemra Ozbek, José Ignacio Garzón, Nir Ben-Tal, Turkan Haliloglu
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics. PLoS Comput. Biol. 11 (10) (2015)
Pemra Ozbek, Seren Soner, Burak Erman, Turkan Haliloglu
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)