Eytan Ruppin

ORCID

Publication Activity (10 Years)

Years Active: 1990-2024
Publications (10 Years): 7

Top Venues

Publications

Yingying Cao, Tian-Gen Chang, Sahil Sahni, Eytan Ruppin
Reusability report: Leveraging supervised learning to uncover phenotype-relevant biology from single-cell RNA sequencing data. Nat. Mac. Intell. 6 (3) (2024)
Jillur Rahman Saurav, Mohammad Sadegh Nasr, Helen H. Shang, Paul Koomey, Michael Robben, Manfred Huber, Jon Weidanz, Bríd Ryan, Eytan Ruppin, Peng Jiang, Jacob M. Luber
A SSIM Guided cGAN Architecture For Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels. CIBCB (2023)
Jillur Rahman Saurav, Mohammad Sadegh Nasr, Paul Koomey, Michael Robben, Manfred Huber, Jon Weidanz, Bríd Ryan, Eytan Ruppin, Peng Jiang, Jacob M. Luber
A SSIM Guided cGAN Architecture For Clinically Driven Generative Image Synthesis of Multiplexed Spatial Proteomics Channels. CoRR (2022)
Miquel Duran-Frigola, Lydia Siragusa, Eytan Ruppin, Xavier Barril, Gabriele Cruciani, Patrick Aloy
Detecting similar binding pockets to enable systems polypharmacology. PLoS Comput. Biol. 13 (6) (2017)
Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan
Functional Alignment of Metabolic Networks. J. Comput. Biol. 23 (5) (2016)
Noam Auslander, Allon Wagner, Matthew A. Oberhardt, Eytan Ruppin
Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction. PLoS Comput. Biol. 12 (9) (2016)
Matthew A. Oberhardt, Raphy Zarecki, Leah Reshef, Fangfang Xia, Miquel Duran-Frigola, Rachel Schreiber, Christopher S. Henry, Nir Ben-Tal, Daniel J. Dwyer, Uri Gophna, Eytan Ruppin
. PLoS Comput. Biol. 12 (1) (2016)
Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan
Functional Alignment of Metabolic Networks. RECOMB (2015)
Raphy Zarecki, Matthew A. Oberhardt, Leah Reshef, Uri Gophna, Eytan Ruppin
A Novel Nutritional Predictor Links Microbial Fastidiousness with Lowered Ubiquity, Growth Rate, and Cooperativeness. PLoS Comput. Biol. 10 (7) (2014)
Liram Vardi, Eytan Ruppin, Roded Sharan
A Linearized Constraint-Based Approach for Modeling Signaling Networks. J. Comput. Biol. 19 (2) (2012)
Oded Magger, Yedael Y. Waldman, Eytan Ruppin, Roded Sharan
Enhancing the Prioritization of Disease-Causing Genes through Tissue Specific Protein Interaction Networks. PLoS Comput. Biol. 8 (9) (2012)
Yael Silberberg, Assaf Gottlieb, Martin Kupiec, Eytan Ruppin, Roded Sharan
Large-Scale Elucidation of Drug Response Pathways in Humans. J. Comput. Biol. 19 (2) (2012)
Assaf Gottlieb, Oded Magger, Igor Berman, Eytan Ruppin, Roded Sharan
PRINCIPLE: a tool for associating genes with diseases via network propagation. Bioinform. 27 (23) (2011)
Shlomi Reuveni, Isaac Meilijson, Martin Kupiec, Eytan Ruppin, Tamir Tuller
Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model. PLoS Comput. Biol. 7 (9) (2011)
Lior Wolf, Chen Goldberg, Nathan Manor, Roded Sharan, Eytan Ruppin
Gene Expression in the Rodent Brain is Associated with Its Regional Connectivity. PLoS Comput. Biol. 7 (5) (2011)
Liat Perlman, Assaf Gottlieb, Nir Atias, Eytan Ruppin, Roded Sharan
Combining Drug and Gene Similarity Measures for Drug-Target Elucidation. J. Comput. Biol. 18 (2) (2011)
Tomer Shlomi, Tomer Benyamini, Eyal Gottlieb, Roded Sharan, Eytan Ruppin
Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect. PLoS Comput. Biol. 7 (3) (2011)
Shlomi Reuveni, Isaac Meilijson, Martin Kupiec, Eytan Ruppin, Tamir Tuller
A Ribosome Flow Model for Analyzing Translation Elongation - (Extended Abstract). RECOMB (2011)
Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Hadas Zur, Eytan Ruppin, Tomer Shlomi
iMAT: an integrative metabolic analysis tool. Bioinform. 26 (24) (2010)
Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinform. 26 (12) (2010)
Shiri Freilich, Anat Kreimer, Elhanan Borenstein, Uri Gophna, Roded Sharan, Eytan Ruppin
Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species. PLoS Comput. Biol. 6 (2) (2010)
Oron Vanunu, Oded Magger, Eytan Ruppin, Tomer Shlomi, Roded Sharan
Associating Genes and Protein Complexes with Disease via Network Propagation. PLoS Comput. Biol. 6 (1) (2010)
Tal Peleg, Nir Yosef, Eytan Ruppin, Roded Sharan
Network-Free Inference of Knockout Effects in Yeast. PLoS Comput. Biol. 6 (1) (2010)
Tamir Tuller, Hadas Birin, Martin Kupiec, Eytan Ruppin
Reconstructing Ancestral Genomic Sequences by Co-Evolution: Formal Definitions, Computational Issues, and Biological Examples. J. Comput. Biol. 17 (9) (2010)
Tamir Tuller, Hadas Birin, Martin Kupiec, Eytan Ruppin
Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples. RECOMB-CG (2009)
Shira Mintz-Oron, Asaph Aharoni, Eytan Ruppin, Tomer Shlomi
Network-based prediction of metabolic enzymes' subcellular localization. Bioinform. 25 (12) (2009)
Tamir Tuller, Udi Rubinstein, Dani Bar, Michael Gurevich, Eytan Ruppin, Martin Kupiec
Higher-Order Genomic Organization of Cellular Functions in Yeast. J. Comput. Biol. 16 (2) (2009)
David Deutscher, Isaac Meilijson, Stefan Schuster, Eytan Ruppin
Can single knockouts accurately single out gene functions? BMC Syst. Biol. 2 (2008)
Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan
QNet: A Tool for Querying Protein Interaction Networks. J. Comput. Biol. 15 (7) (2008)
Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter
Constraint-based functional similarity of metabolic genes: going beyond network topology. Bioinform. 23 (16) (2007)
Tamir Tuller, Martin Kupiec, Eytan Ruppin
. PLoS Comput. Biol. 3 (12) (2007)
Liat Segal, Michal Lapidot, Zach Solan, Eytan Ruppin, Yitzhak Pilpel, David Horn
Nucleotide variation of regulatory motifs may lead to distinct expression patterns. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Irit Fishel, Alon Kaufman, Eytan Ruppin
Meta-analysis of gene expression data: a predictor-based approach. Bioinform. 23 (13) (2007)
Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko
Pepitope: epitope mapping from affinity-selected peptides. Bioinform. 23 (23) (2007)
Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan
QNet: A Tool for Querying Protein Interaction Networks. RECOMB (2007)
Shay B. Cohen, Gideon Dror, Eytan Ruppin
Feature Selection via Coalitional Game Theory. Neural Comput. 19 (7) (2007)
Vered Kunik, Yasmine Meroz, Zach Solan, Ben Sandbank, Uri Weingart, Eytan Ruppin, David Horn
Functional Representation of Enzymes by Specific Peptides. PLoS Comput. Biol. 3 (8) (2007)
Ofer Meshi, Tomer Shlomi, Eytan Ruppin
Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network. BMC Syst. Biol. 1 (2007)
Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Nir Yosef, Zohar Yakhini, Anya Tsalenko, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Eytan Ruppin, Roded Sharan
A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data. Bioinform. 23 (2) (2007)
Alon Keinan, Ben Sandbank, Claus C. Hilgetag, Isaac Meilijson, Eytan Ruppin
Axiomatic Scalable Neurocontroller Analysis via the Shapley Value. Artif. Life 12 (3) (2006)
Amit Kagian, Gideon Dror, Tommer Leyvand, Daniel Cohen-Or, Eytan Ruppin
A Humanlike Predictor of Facial Attractiveness. NIPS (2006)
Alon Kaufman, Gideon Dror, Isaac Meilijson, Eytan Ruppin
Neurons Carries Information on Their Synaptic Connectivity. PLoS Comput. Biol. 2 (12) (2006)
Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter
Topology-Based Similarity of Metabolic Genes. WABI (2006)
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
A direct comparison of protein interaction confidence assignment schemes. BMC Bioinform. 7 (2006)
Nir Yosef, Alon Kaufman, Eytan Ruppin
Inferring Functional Pathways from Multi-Perturbation Data. ISMB (Supplement of Bioinformatics) (2006)
Yonatan Bilu, Tomer Shlomi, Naama Barkai, Eytan Ruppin
Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States. PLoS Comput. Biol. 2 (8) (2006)
Zohar Ganon, Alon Keinan, Eytan Ruppin
Neurocontroller Analysis via Evolutionary Network Minimization. Artif. Life 12 (3) (2006)
Yael Eisenthal, Gideon Dror, Eytan Ruppin
Facial Attractiveness: Beauty and the Machine. Neural Comput. 18 (1) (2006)
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan
QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinform. 7 (2006)
Keren Saggie-Wexler, Alon Keinan, Eytan Ruppin
Neural Processing of Counting in Evolved Spiking and McCulloch-Pitts Agents. Artif. Life 12 (1) (2006)
Elhanan Borenstein, Eytan Ruppin
The evolution of imitation and mirror neurons in adaptive agents. Cogn. Syst. Res. 6 (3) (2005)
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
Comparison of Protein-Protein Interaction Confidence Assignment Schemes. Systems Biology and Regulatory Genomics (2005)
Vered Kunik, Zach Solan, Shimon Edelman, Eytan Ruppin, David Horn
Motif Extraction and Protein Classification. CSB (2005)
Zach Solan, David Horn, Eytan Ruppin, Shimon Edelman
Unsupervised learning of natural languages. Proc. Natl. Acad. Sci. USA 102 (33) (2005)
Shay B. Cohen, Eytan Ruppin, Gideon Dror
Feature Selection Based on the Shapley Value. IJCAI (2005)
Alon Kaufman, Alon Keinan, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments. PLoS Comput. Biol. 1 (6) (2005)
Alon Kaufman, Martin Kupiec, Eytan Ruppin
Multi-Knockout Genetic Network Analysis: The Rad6 Example. CSB (2004)
Alon Keinan, Alon Kaufman, Nadia Sachs, Claus C. Hilgetag, Eytan Ruppin
Fair localization of function via multi-lesion analysis. Neuroinformatics 2 (2) (2004)
Alon Keinan, Ben Sandbank, Claus C. Hilgetag, Isaac Meilijson, Eytan Ruppin
Fair Attribution of Functional Contribution in Artificial and Biological Networks. Neural Comput. 16 (9) (2004)
Keren Saggie, Alon Keinan, Eytan Ruppin
Spikes that count: rethinking spikiness in neurally embedded systems. Neurocomputing (2004)
Alon Keinan, Claus C. Hilgetag, Isaac Meilijson, Eytan Ruppin
Causal localization of neural function: the Shapley value method. Neurocomputing (2004)
Zohar Ganon, Alon Keinan, Eytan Ruppin
Evolutionary Network Minimization: Adaptive Implicit Pruning of Successful Agents. ECAL (2003)
Keren Saggie, Alon Keinan, Eytan Ruppin
Solving a Delayed Response Task with Spiking. ECAL (2003)
Ranit Aharonov-Barki, Lior Segev, Isaac Meilijson, Eytan Ruppin
Localization of Function via Lesion Analysis. Neural Comput. 15 (4) (2003)
Shlomy Boshy, Eytan Ruppin
Evolving Small Neurocontrollers with Self-Organized Compact Encoding. Artif. Life 9 (2) (2003)
Zach Solan, David Horn, Eytan Ruppin, Shimon Edelman
Unsupervised Context Sensitive Language Acquisition from a Large Corpus. NIPS (2003)
Hezi Avraham, Gal Chechik, Eytan Ruppin
Are There Representations in Embodied Evolved Agents? Taking Measures. ECAL (2003)
Lior Segev, Ranit Aharonov-Barki, Isaac Meilijson, Eytan Ruppin
High-Dimensional Analysis of Evolutionary Autonomous Agents. Artif. Life 9 (1) (2003)
Zach Solan, Eytan Ruppin, David Horn, Shimon Edelman
Automatic Acquisition and Efficient Representation of Syntactic Structures. NIPS (2002)
Daphna Joel, Yael Niv, Eytan Ruppin
Actor-critic models of the basal ganglia: new anatomical and computational perspectives. Neural Networks 15 (4-6) (2002)
Yael Niv, Daphna Joel, Isaac Meilijson, Eytan Ruppin
Evolution of reinforcement learning in foraging bees: a simple explanation for risk averse behavior. Neurocomputing (2002)
Yael Niv, Daphna Joel, Isaac Meilijson, Eytan Ruppin
Evolution of Reinforcement Learning in Uncertain Environments: A Simple Explanation for Complex Foraging Behaviors. Adapt. Behav. 10 (1) (2002)
Lev Finkelstein, Evgeniy Gabrilovich, Yossi Matias, Ehud Rivlin, Zach Solan, Gadi Wolfman, Eytan Ruppin
Placing search in context: the concept revisited. ACM Trans. Inf. Syst. 20 (1) (2002)
Lev Finkelstein, Evgeniy Gabrilovich, Yossi Matias, Ehud Rivlin, Zach Solan, Gadi Wolfman, Eytan Ruppin
Placing search in context: the concept revisited. WWW (2001)
Nir Levy, David Horn, Isaac Meilijson, Eytan Ruppin
Distributed synchrony in a cell assembly of spiking neurons. Neural Networks 14 (6-7) (2001)
Tuvik Beker, Ranit Aharonov-Barki, Eytan Ruppin
Emerging command neuron circuitry in evolved autonomous agents. Neurocomputing (2001)
Gal Chechik, Isaac Meilijson, Eytan Ruppin
Effective Neuronal Learning with Ineffective Hebbian Learning Rules. Neural Comput. 13 (4) (2001)
Yael Niv, Daphna Joel, Isaac Meilijson, Eytan Ruppin
Evolution of Reinforcement Learning in Uncertain Environments: Emergence of Risk-Aversion and Matching. ECAL (2001)
Ranit Aharonov-Barki, Isaac Meilijson, Eytan Ruppin
Understanding the Agent's Brain: A Quantitative Approach. ECAL (2001)
Ranit Aharonov-Barki, Tuvik Beker, Eytan Ruppin
Emergence of Memory-Driven Command Neurons in Evolved Artificial Agents. Neural Comput. 13 (3) (2001)
David Horn, Nir Levy, Eytan Ruppin
Distributed synchrony in an attractor of spiking neurons. Neurocomputing (2000)
Ranit Aharonov-Barki, Isaac Meilijson, Eytan Ruppin
Who Does What? A Novel Algorithm to Determine Function Localization. NIPS (2000)
Gal Chechik, Isaac Meilijson, Eytan Ruppin
Neuronal normalization provides effective learning through ineffective synaptic learning rules. Neurocomputing (2000)
Eyal Cohen, Nir Levy, Eytan Ruppin
Global vs. local processing of compressed representations: A computational model of visual search. Neurocomputing (2000)
Ranit Aharonov-Barki, Tuvik Beker, Eytan Ruppin
Spontaneous Evolution of Command Neurons, Place Cells and Memory Mechanisms in Autonomous Agents. ECAL (1999)
Nir Levy, David Horn, Eytan Ruppin
Associative Memory in a Multimodular Network. Neural Comput. 11 (7) (1999)
David Horn, Nir Levy, Isaac Meilijson, Eytan Ruppin
Distributed Synchrony of Spiking Neurons in a Hebbian Cell Assembly. NIPS (1999)
David Horn, Nir Levy, Eytan Ruppin
The importance of nonlinear dendritic processing in multimodular memory networks. Neurocomputing (1999)
Eytan Ruppin, Elad Ofer, James A. Reggia, Kenneth Revett, Sharon Goodall
Pathogenic mechanisms in ischemic damage: a computational study. Comput. Biol. Medicine 29 (1) (1999)
Gal Chechik, Isaac Meilijson, Eytan Ruppin
Neuronal regulation: A biologically plausible mechanism for efficient synaptic pruning in development. Neurocomputing (1999)
Gal Chechik, Isaac Meilijson, Eytan Ruppin
Effective Learning Requires Neuronal Remodeling of Hebbian Synapses. NIPS (1999)
Gal Chechik, Isaac Meilijson, Eytan Ruppin
Neuronal Regulation: A Mechanism for Synaptic Pruning During Brain Maturation. Neural Comput. 11 (8) (1999)
Asnat Greenstein-Messica, Eytan Ruppin
Synaptic Runaway In Associative Networks And The Pathogenesis Of Schizophrenia. Neural Comput. 10 (2) (1998)
Eytan Ruppin, James A. Reggia
Seeking order in disorder: computational studies of neurologic and psychiatric diseases. Artif. Intell. Medicine 13 (1-2) (1998)
Gal Chechik, Isaac Meilijson, Eytan Ruppin
Neuronal Regulation Implements Efficient Synaptic Pruning. NIPS (1998)
Gal Chechik, Isaac Meilijson, Eytan Ruppin
Synaptic Pruning In Development: A Computational Account. Neural Comput. 10 (7) (1998)
David Horn, Nir Levy, Eytan Ruppin
Memory Maintenance via Neuronal Regulation. Neural Comput. 10 (1) (1998)
Eyal Cohen, Eytan Ruppin
On Parallel versus Serial Processing: A Computational Study of Visual Search. NIPS (1997)

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Publication Activity (10 Years)

Top Topics

Top Venues

Eytan Ruppin