Tomer Shlomi

Publication Activity (10 Years)

Years Active: 2005-2013
Publications (10 Years): 0

Top Topics

Prediction Accuracy

Mathematical Modeling

Top Venues

PLoS Comput. Biol.

Publications

Naama Tepper, Tomer Shlomi
An integrated computational approach for metabolic flux analysis coupled with inference of tandem-MS collisional fragments. Bioinform. 29 (23) (2013)
Roi Adadi, Benjamin Volkmer, Ron Milo, Matthias Heinemann, Tomer Shlomi
Prediction of Microbial Growth Rate versus Biomass Yield by a Metabolic Network with Kinetic Parameters. PLoS Comput. Biol. 8 (7) (2012)
Itai Sharon, Sivan Bercovici, Ron Y. Pinter, Tomer Shlomi
Pathway-Based Functional Analysis of Metagenomes. J. Comput. Biol. 18 (3) (2011)
Tomer Shlomi, Tomer Benyamini, Eyal Gottlieb, Roded Sharan, Eytan Ruppin
Genome-Scale Metabolic Modeling Elucidates the Role of Proliferative Adaptation in Causing the Warburg Effect. PLoS Comput. Biol. 7 (3) (2011)
Hadas Zur, Eytan Ruppin, Tomer Shlomi
iMAT: an integrative metabolic analysis tool. Bioinform. 26 (24) (2010)
Naama Tepper, Tomer Shlomi
Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways. Bioinform. 26 (4) (2010)
Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinform. 26 (12) (2010)
Sivan Bercovici, Itai Sharon, Ron Y. Pinter, Tomer Shlomi
Pathway-Based Functional Analysis of Metagenomes. RECOMB (2010)
Oron Vanunu, Oded Magger, Eytan Ruppin, Tomer Shlomi, Roded Sharan
Associating Genes and Protein Complexes with Disease via Network Propagation. PLoS Comput. Biol. 6 (1) (2010)
Shira Mintz-Oron, Asaph Aharoni, Eytan Ruppin, Tomer Shlomi
Network-based prediction of metabolic enzymes' subcellular localization. Bioinform. 25 (12) (2009)
Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan
QNet: A Tool for Querying Protein Interaction Networks. J. Comput. Biol. 15 (7) (2008)
Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter
Constraint-based functional similarity of metabolic genes: going beyond network topology. Bioinform. 23 (16) (2007)
Itay Mayrose, Osnat Penn, Elana Erez, Nimrod D. Rubinstein, Tomer Shlomi, Natalia Tarnovitski Freund, Erez M. Bublil, Eytan Ruppin, Roded Sharan, Jonathan M. Gershoni, Eric Martz, Tal Pupko
Pepitope: epitope mapping from affinity-selected peptides. Bioinform. 23 (23) (2007)
Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan
QNet: A Tool for Querying Protein Interaction Networks. RECOMB (2007)
Ofer Meshi, Tomer Shlomi, Eytan Ruppin
Evolutionary conservation and over-representation of functionally enriched network patterns in the yeast regulatory network. BMC Syst. Biol. 1 (2007)
Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan
SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Oleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter
Topology-Based Similarity of Metabolic Genes. WABI (2006)
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
A direct comparison of protein interaction confidence assignment schemes. BMC Bioinform. 7 (2006)
Yonatan Bilu, Tomer Shlomi, Naama Barkai, Eytan Ruppin
Conservation of Expression and Sequence of Metabolic Genes Is Reflected by Activity Across Metabolic States. PLoS Comput. Biol. 2 (8) (2006)
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sharan
QPath: a method for querying pathways in a protein-protein interaction network. BMC Bioinform. 7 (2006)
Silpa Suthram, Tomer Shlomi, Eytan Ruppin, Roded Sharan, Trey Ideker
Comparison of Protein-Protein Interaction Confidence Assignment Schemes. Systems Biology and Regulatory Genomics (2005)