Wolfram Liebermeister

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 11

Top Topics

Cost Minimization

Physicochemical Properties

Hierarchical Model

Systems Biology

Top Venues

PLoS Comput. Biol.

Briefings Bioinform.

Publications

Hugo Dourado, Wolfram Liebermeister, Oliver Ebenhöh, Martin J. Lercher
Mathematical properties of optimal fluxes in cellular reaction networks at balanced growth. PLoS Comput. Biol. 19 (6) (2023)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50 (W1) (2022)
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali S. Saglam, Dilawar Singh, Ankur Sinha, Jacky Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR (2022)
Jonathan R. Karr, Wolfram Liebermeister, Arthur P. Goldberg, John A. P. Sekar, Bilal Shaikh
Structured spreadsheets with ObjTables enable data reuse and integration. CoRR (2020)
Timo Lubitz, Wolfram Liebermeister
Parameter balancing: consistent parameter sets for kinetic metabolic models. Bioinform. 35 (19) (2019)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 19 (1) (2018)
Meike T. Wortel, Elad Noor, Michael Ferris, Frank J. Bruggeman, Wolfram Liebermeister
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield. PLoS Comput. Biol. 14 (2) (2018)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 18 (5) (2017)
Elad Noor, Avi I. Flamholz, Arren Bar-Even, Dan Davidi, Ron Milo, Wolfram Liebermeister
The Protein Cost of Metabolic Fluxes: Prediction from Enzymatic Rate Laws and Cost Minimization. PLoS Comput. Biol. 12 (11) (2016)
Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans. Biomed. Eng. 63 (10) (2016)
Timo Lubitz, Jens Hahn, Frank T. Bergmann, Elad Noor, Edda Klipp, Wolfram Liebermeister
SBtab: a flexible table format for data exchange in systems biology. Bioinform. 32 (16) (2016)
Lucian Paul Smith, Michael Hucka, Stefan Hoops, Andrew Finney, Martin Ginkel, Chris J. Myers, Ion I. Moraru, Wolfram Liebermeister
SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3. J. Integr. Bioinform. 12 (2) (2015)
Elad Noor, Arren Bar-Even, Avi I. Flamholz, Ed Reznik, Wolfram Liebermeister, Ron Milo
Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism. PLoS Comput. Biol. 10 (2) (2014)
Marvin Schulz, Edda Klipp, Wolfram Liebermeister
Propagating semantic information in biochemical network models. BMC Bioinform. 13 (2012)
Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister
Annotation and merging of SBML models with semanticSBML. Bioinform. 26 (3) (2010)
Keren Yizhak, Tomer Benyamini, Wolfram Liebermeister, Eytan Ruppin, Tomer Shlomi
Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model. Bioinform. 26 (12) (2010)
Falko Krause, Marvin Schulz, Timo Lubitz, Wolfram Liebermeister
semanticsSBML 2.0 - A Collection of Online Services for SBML Models. SWAT4LS (2010)
Falko Krause, Marvin Schulz, Timo Lubitz, Wolfram Liebermeister
semanticSBML 2.0 - A Collection of Online Services for SBML Models CoRR (2010)
Wolfram Liebermeister, Jannis Uhlendorf, Edda Klipp
Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation. Bioinform. 26 (12) (2010)
Simon Borger, Jannis Uhlendorf, Anselm Helbig, Wolfram Liebermeister
Integration of Enzyme Kinetic Data from Various Sources. Silico Biol. 7 (6) (2007)
Wolfram Liebermeister
Predicting Physiological Concentrations of Metabolites from Their Molecular Structure. J. Comput. Biol. 12 (10) (2005)
Wolfram Liebermeister
Linear modes of gene expression determined by independent component analysis. Bioinform. 18 (1) (2002)
Wolfram Liebermeister
Independent component analysis of gene expression data. German Conference on Bioinformatics (2001)
Dirk Holste, Dieter Beule, Wolfram Liebermeister, Johannes Schuchhardt, Hanspeter Herzel
Mutual Information Analysis of Surrogate Gene Expression Data. German Conference on Bioinformatics (1999)