Frank J. Bruggeman

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 9

Top Topics

Equilibrium Point

Biological Data

Metabolic Networks

Drosophila Melanogaster

Top Venues

PLoS Comput. Biol.

J. Comput. Biol.

Publications

Frank J. Bruggeman, Maaike Remeijer, Maarten Droste, Luis Salinas, Meike T. Wortel, Robert Planqué, Herbert M. Sauro, Bas Teusink, Hans V. Westerhoff
Whole-cell metabolic control analysis. Biosyst. 234 (2023)
David D. van Niekerk, Erik Rust, Frank J. Bruggeman, Hans V. Westerhoff, Jacky L. Snoep
Is distance from equilibrium a good indicator for a reaction's flux control? Biosyst. 232 (2023)
Tom J. Clement, Erik B. Baalhuis, Bas Teusink, Frank J. Bruggeman, Robert Planqué, Daan H. de Groot
Unlocking Elementary Conversion Modes: ecmtool Unveils All Capabilities of Metabolic Networks. Patterns 2 (1) (2021)
Steven A. Frank, Frank J. Bruggeman
The Fundamental Equations of Change in Statistical Ensembles and Biological Populations. Entropy 22 (12) (2020)
Steven A. Frank, Frank J. Bruggeman
The fundamental equations of change in statistical ensembles and biological populations. CoRR (2020)
Daan H. de Groot, Josephus Hulshof, Bas Teusink, Frank J. Bruggeman, Robert Planqué
Elementary Growth Modes provide a molecular description of cellular self-fabrication. PLoS Comput. Biol. 16 (1) (2020)
Daan H. de Groot, Coco van Boxtel, Robert Planqué, Frank J. Bruggeman, Bas Teusink
The number of active metabolic pathways is bounded by the number of cellular constraints at maximal metabolic rates. PLoS Comput. Biol. 15 (3) (2019)
Meike T. Wortel, Elad Noor, Michael Ferris, Frank J. Bruggeman, Wolfram Liebermeister
Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield. PLoS Comput. Biol. 14 (2) (2018)
Robert Planqué, Josephus Hulshof, Bas Teusink, Johannes C. Hendriks, Frank J. Bruggeman
Maintaining maximal metabolic flux by gene expression control. PLoS Comput. Biol. 14 (9) (2018)
Arne C. Reimers, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie
Fast Flux Module Detection Using Matroid Theory. J. Comput. Biol. 22 (5) (2015)
Timo R. Maarleveld, Meike T. Wortel, Brett G. Olivier, Bas Teusink, Frank J. Bruggeman
Interplay between Constraints, Objectives, and Optimality for Genome-Scale Stoichiometric Models. PLoS Comput. Biol. 11 (4) (2015)
Katja N. Rybakova, Frank J. Bruggeman, Aleksandra Tomaszewska, Martijn J. Moné, Carsten Carlberg, Hans V. Westerhoff
Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism. PLoS Comput. Biol. 11 (4) (2015)
Arne C. Müller, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie
Fast Flux Module Detection Using Matroid Theory. RECOMB (2014)
Rainer Breitling, Frank J. Bruggeman, Corrado Priami, Adelinde M. Uhrmacher
Formal Methods in Molecular Biology (Dagstuhl Seminar 11151). Dagstuhl Reports 1 (4) (2011)
Hans Lehrach, Ralf Sudbrak, Peter Boyle, Markus Pasterk, Kurt Zatloukal, Heimo Müller, Tim Hubbard, Angela Brand, Mark A. Girolami, Daniel Jameson, Frank J. Bruggeman, Hans V. Westerhoff
ITFoM - The IT Future of Medicine. FET (2011)
Frank J. Bruggeman, Nils Blüthgen, Hans V. Westerhoff
Noise Management by Molecular Networks. PLoS Comput. Biol. 5 (9) (2009)
Fred C. Boogerd, Frank J. Bruggeman, Robert C. Richardson, A. Stephan, Hans V. Westerhoff
Emergence and Its Place in Nature: A Case Study of Biochemical Networks. Synth. 145 (1) (2005)