Ron Henkel

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 20

Top Topics

Frequent Patterns

Chemical Reaction

Computational Models

Graph Databases

Top Venues

Briefings Bioinform.

Publications

Judith A. H. Wodke, Ron Henkel, Dagmar Waltemath
MeDaX project plan: How to sustainably improve biomedical (research) data management. SWAT4HCLS (2023)
Ron Henkel, Dagmar Waltemath
Contributions to the reuse and reproducibility of computational biology models. SWAT4HCLS (2023)
Felix Menzel, Dagmar Waltemath, Ron Henkel
Exploring New Possibilities for Research Data Exploration Using the Example of the German Core Data Set. MIE (2023)
Judith A. H. Wodke, Lea Michaelis, Ron Henkel
The MeDaX Knowledge Graph Prototype. MIE (2023)
Lea Gütebier, Ron Henkel, Christian Niklas, Dagmar Waltemath
Exploring Use Cases for CovidGraph. MIE (2023)
Kerstin Gierend, Judith A. H. Wodke, Sascha Genehr, Robert Gött, Ron Henkel, Frank Krüger, Markus Mandalka, Lea Michaelis, Alexander Scheuerlein, Max Schröder, Atinkut Zeleke, Dagmar Waltemath
TAPP: Defining standard provenance information for clinical research data and workflows - Obstacles and opportunities. WWW (Companion Volume) (2023)
Ron Henkel, Lea Gütebier, Dagmar Waltemath
CovidGraph: Integrating COVID-19 Data. MIE (2022)
Lea Gütebier, Tim Bleimehl, Ron Henkel, Jamie Munro, Sebastian Müller, Axel Morgner, Jakob Laenge, Anke Pachauer, Alexander Erdl, Jens Weimar, Kirsten Walther Langendorf, Vincent Vialard, Thorsten Liebig, Martin Preusse, Dagmar Waltemath, Alexander Jarasch
CovidGraph: a graph to fight COVID-19. Bioinform. 38 (20) (2022)
Martin Preusse, Alexander Jarasch, Tim Bleimehl, Sebastian Muller, Jamie Munro, Lea Gutebier, Ron Henkel, Dagmar Waltemath
COVIDGraph: Connecting Biomedical COVID-19 Resources and Computational Biology Models. SEA-Data@VLDB (2021)
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
Identifying frequent patterns in biochemical reaction networks: a workflow. Database J. Biol. Databases Curation 2018 (2018)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 19 (1) (2018)
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
Identifying frequent patterns in biochemical reaction networks - a workflow. PeerJ Prepr. 6 (2018)
Ron Henkel, Robert Hoehndorf, Tim Kacprowski, Christian Knüpfer, Wolfram Liebermeister, Dagmar Waltemath
Notions of similarity for systems biology models. Briefings Bioinform. 18 (5) (2017)
Fabienne Lambusch, Dagmar Waltemath, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Ron Henkel
Identifying frequent patterns in biochemical reaction networks - a workflow. PeerJ Prepr. 5 (2017)
Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor Saqi, Ron Henkel, Johann Pellet, Charles Auffray
STON: exploring biological pathways using the SBGN standard and graph databases. BMC Bioinform. 17 (2016)
Ron Henkel, Fabienne Lambusch, Olaf Wolkenhauer, Kurt Sandkuhl, Christian Rosenke, Dagmar Waltemath
Finding patterns in biochemical reaction networks. PeerJ Prepr. 4 (2016)
Philipp Koldrack, Ron Henkel, Frank Krüger, Stefan J. Teipel, Thomas Kirste
Supporting situation awareness of dementia patients in outdoor environments. PervasiveHealth (2015)
Ron Henkel, Olaf Wolkenhauer, Dagmar Waltemath
Combining computational models, semantic annotations and simulation experiments in a graph database. Database J. Biol. Databases Curation 2015 (2015)
Rebekka Alm, Dagmar Waltemath, Markus Wolfien, Olaf Wolkenhauer, Ron Henkel
Annotation-based feature extraction from sets of SBML models. J. Biomed. Semant. 6 (2015)
Ron Henkel, Fabienne Lambusch, Dagmar Waltemath
Finding pattern in biochemical reaction networks - a sub-graph mining approach. PeerJ Prepr. 3 (2015)
Rebekka Alm, Dagmar Waltemath, Olaf Wolkenhauer, Ron Henkel
Annotation-Based Feature Extraction from Sets of SBML Models. DILS (2014)
Ron Henkel, Dagmar Waltemath
MaSyMoS: Finding Hidden Treasures in Model Repositories. SWAT4LS (2014)
Dagmar Waltemath, Ron Henkel, Robert Hälke, Martin Scharm, Olaf Wolkenhauer
Improving the reuse of computational models through version control. Bioinform. 29 (6) (2013)
Ron Henkel, Nicolas Le Novère, Olaf Wolkenhauer, Dagmar Waltemath
Considerations of graph-based concepts to manage of computational biology models and associated simulations. GI-Jahrestagung (2012)
Dagmar Waltemath, Ron Henkel, Holger Meyer, Andreas Heuer
Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen. Datenbank-Spektrum 11 (1) (2011)
Ron Henkel
Distributed Information Retrieval of Computational Biological Models. AlgoSyn (2010)
Ron Henkel, Lukas Endler, Andre Peters, Nicolas Le Novère, Dagmar Waltemath
Ranked retrieval of Computational Biology models. BMC Bioinform. 11 (2010)
Dagmar Köhn, Carsten Maus, Ron Henkel, Martin Kolbe
Towards Enhanced Retrieval of Biological Models through Annotation-Based Ranking. DILS (2009)