Charles Auffray

Publication Activity (10 Years)

Years Active: 1984-2022
Publications (10 Years): 9

Top Topics

Biological Pathways

Top Venues

Briefings Bioinform.

J. Comput. Biol.

Publications

Irina Balaur, Ludovic Roy, Vasundra Touré, Alexander Mazein, Charles Auffray
GraphML-SBGN bidirectional converter for metabolic networks. J. Integr. Bioinform. 19 (4) (2022)
Hasan Balci, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Ugur Dogrusoz
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps. Bioinform. 37 (10) (2021)
Martin Siebenhaller, Sune S. Nielsen, Fintan McGee, Irina Balaur, Charles Auffray, Alexander Mazein
Human-like layout algorithms for signalling hypergraphs: outlining requirements. Briefings Bioinform. 21 (1) (2020)
Mansoor Saqi, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures. Briefings Bioinform. 20 (2) (2019)
Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Yu. Zinovyev, Ugur Dogrusoz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas S. Ligon, Anna Niarakis, David P. Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider
Community-driven roadmap for integrated disease maps. Briefings Bioinform. 20 (2) (2019)
Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray
A computational framework for complex disease stratification from multiple large-scale datasets. BMC Syst. Biol. 12 (1) (2018)
Irina Balaur, Mansoor Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer. J. Comput. Biol. 24 (10) (2017)
Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor Saqi, Ron Henkel, Johann Pellet, Charles Auffray
STON: exploring biological pathways using the SBGN standard and graph databases. BMC Bioinform. 17 (2016)
Artem Lysenko, Irina A. Roznovat, Mansoor Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray
Representing and querying disease networks using graph databases. BioData Min. 9 (2016)
Tommaso Mazza, Stefano Castellana, Angelo Andriulli, Charles Auffray, Manlio Vinciguerra, Valerio Pazienza
Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a. Biosyst. 114 (1) (2013)
Jesper Tegnér, Albert Compte, Charles Auffray, Gary An, Gunnar Cedersund, Gilles Clermont, Boris S. Gutkin, Zoltán N. Oltvai, Klaas Enno Stephan, Randy Thomas, Pablo Villoslada
Computational disease modeling - fact or fiction? BMC Syst. Biol. 3 (2009)
Motohiko Tanino, Marie-Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, Kouichi Itoh, Shinya Watanabe, Sandro José de Souza, Sandrine Imbeaud, Esther Graudens, Eric Eveno, Phillip Hilton, Yukio Sudo, Janet Kelso, Kazuho Ikeo, Tadashi Imanishi, Takashi Gojobori, Charles Auffray, Winston Hide, Kousaku Okubo
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. Nucleic Acids Res. 33 (Database-Issue) (2005)
Magali Roux-Rouquié, Leroy E. Hood, Sandrine Imbeaud, Charles Auffray
Issues in Computational Methods for Functional Genomics and Systems Biology. CMSB (2003)
Jiri Novotny, Charles Auffray
A program for prediction of protein secondary structure from nucleotide sequence data: application to histocompatibility antigens. Nucleic Acids Res. 12 (1) (1984)