Heather J. Ruskin

Publication Activity (10 Years)

Years Active: 2000-2019
Publications (10 Years): 8

Top Topics

Computational Models

Cellular Automata

Gene Regulatory

Top Venues

Publications

Joseph Kehoe, Martin Crane, Heather J. Ruskin
Improving Confidence in Simulations through the Application of Multiple Updating Strategies. HPCS (2019)
Eoin Cartwright, Martin Crane, Heather J. Ruskin
Financial Time Series: Motif Discovery and Analysis Using VALMOD. ICCS (5) (2019)
Andreas Hillmann, Martin Crane, Heather J. Ruskin
Efficient Computational Models for assessment of Spatial Infection Features. HPCS (2019)
Andreas Hillmann, Martin Crane, Heather J. Ruskin
A Computational Lymph Tissue Model for Long Term HIV Infection Progression and Immune Fitness. AICS (2017)
Irina Balaur, Mansoor Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer. J. Comput. Biol. 24 (10) (2017)
Na Li, Martin Crane, Cathal Gurrin, Heather J. Ruskin
Finding Motifs in Large Personal Lifelogs. AH (2016)
Marija Bezbradica, Martin Crane, Heather J. Ruskin
Applications of High Performance Algorithms to Large Scale Cellular Automata Frameworks Used in Pharmaceutical Modelling. J. Cell. Autom. 11 (1) (2016)
Na Li, Cathal Gurrin, Martin Crane, Heather J. Ruskin
NTCIR-12 Lifelog Data Analytics. LTA@MM (2016)
Heather J. Ruskin, Dimitri Perrin, Irina A. Roznovat
Building cross-scale models of epigenetic mechanisms. BIBM (2014)
Alina Sîrbu, Martin Crane, Heather J. Ruskin
EGIA - Evolutionary Optimisation of Gene Regulatory Networks, an Integrative Approach. CompleNet (2014)
Irina A. Roznovat, Heather J. Ruskin
LogisticCrypt - A logistic model of intestinal crypt structure. BIBM (2014)
Marija Bezbradica, Heather J. Ruskin, Martin Crane
Comparative analysis of asynchronous cellular automata in stochastic pharmaceutical modelling. J. Comput. Sci. 5 (5) (2014)
Irina A. Roznovat, Heather J. Ruskin
A computational analysis on methylation inhibition during intestinal cancer initiation. BIBM (2014)
Na Li, Martin Crane, Heather J. Ruskin, Cathal Gurrin
Random Matrix Ensembles of Time Correlation Matrices to Analyze Visual Lifelogs. MMM (1) (2014)
Marija Bezbradica, Heather J. Ruskin
Modelling Impact of Morphological Urban Structure and Cognitive Behaviour on Pedestrian Flows. ICCSA (4) (2014)
Na Li, Martin Crane, Heather J. Ruskin
Automatically Detecting "Significant Events" on SenseCam. Int. J. Wavelets Multiresolution Inf. Process. 11 (6) (2013)
Na Li, Martin Crane, Heather J. Ruskin, Cathal Gurrin
Application of statistical physics for the identification of important events in visual lifelogs. BIBM (2013)
Na Li, Martin Crane, Heather J. Ruskin, Cathal Gurrin
Multiscaled Cross-Correlation Dynamics on SenseCam Lifelogged Images. MMM (1) (2013)
Irina-Afrodita Roznovat, Heather J. Ruskin
Interdependencies of Genetic and Epigenetic Events in a Computational Model for Colon Cancer Dynamics. ERCIM News 2013 (95) (2013)
Irina A. Roznovat, Heather J. Ruskin
Methylation Inhibitors and Carcinogens in an Agent-Based Model for Colon Crypt Dynamics during Cancer Development. EMS (2013)
Na Li, Martin Crane, Cathal Gurrin, Heather J. Ruskin
Applying Random Matrix Theory Filters on SenseCam Images. ERCIM News 2013 (95) (2013)
Marija Bezbradica, Heather J. Ruskin, Martin Crane
Probabilistic Pharmaceutical Modelling: A Comparison Between Synchronous and Asynchronous Cellular Automata. PPAM (2) (2013)
Jelena Vasic, Heather J. Ruskin
A Cellular Automata-Based Network Model for Heterogeneous Traffic: Intersections, Turns and Their Connection. ACRI (2012)
Jelena Vasic, Heather J. Ruskin
Agent-based Space-time Discrete Simulation of Urban Traffic Including Bicycles. ANT/MobiWIS (2012)
Irina A. Roznovat, Heather J. Ruskin
A computational model for genetic and epigenetic signals in colon cancer. BIBM Workshops (2012)
Dimitri Perrin, Marija Bezbradica, Martin Crane, Heather J. Ruskin, Christophe Duhamel
High-Performance Computing for Data Analytics. DS-RT (2012)
Jane Kernan, Heather J. Ruskin
Microarrays - Innovative Standards in a Changing World: the Case for Cloud. ERCIM News 2012 (90) (2012)
Na Li, Martin Crane, Heather J. Ruskin
Visual Experience for Recognising Human Activities. EvAAL (2012)
Alina Sîrbu, Heather J. Ruskin, Martin Crane
Integrating heterogeneous gene expression data for gene regulatory network modelling. Theory Biosci. 131 (2) (2012)
Marija Bezbradica, Martin Crane, Heather J. Ruskin
Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling. HPCS (2012)
Na Li, Martin Crane, Heather J. Ruskin
Automatically Detecting "Significant Events" on SenseCam™. ERCIM News 2011 (87) (2011)
Jelena Vasic, Heather J. Ruskin
A Discrete Flow Simulation Model for Urban Road Networks, with Application to Combined Car and Single-File Bicycle Traffic. ICCSA (1) (2011)
Jelena Vasic, Heather J. Ruskin
A Discrete Simulation Model for Traffic Including Bicycles on Urban Networks, Applied to Intersection of Two One-Way Streets. PPAM (2) (2011)
Grainne Kerr, Dimitri Perrin, Heather J. Ruskin, Martin Crane
Edge-Weighting of Gene Expression Graphs. Adv. Complex Syst. 13 (2) (2010)
Niall M. McMahon, Martin Crane, Heather J. Ruskin
Drug Dissolution Modelling. ERCIM News 2010 (82) (2010)
Alina Sîrbu, Heather J. Ruskin, Martin Crane
Modelling Gene Regulatory Networks - An Integrative Approach. ERCIM News 2010 (81) (2010)
Alina Sîrbu, Heather J. Ruskin, Martin Crane
Comparison of evolutionary algorithms in gene regulatory network model inference. BMC Bioinform. 11 (2010)
John Burns, Heather J. Ruskin, Dimitri Perrin, John Walsh
Visualization of Complex Biological Systems: An Immune Response Model Using OpenGL. Complex (1) (2009)
Dimitri Perrin, Heather J. Ruskin
From Bio-inspired Computing to E-Biology. C5 (2009)
Benoit Claude, Dimitri Perrin, Heather J. Ruskin
Considerations for a Social and Geographical Framework for Agent-Based Epidemics. CASoN (2009)
Thomas Conlon, Heather J. Ruskin, Martin Crane
Seizure characterisation using frequency-dependent multivariate dynamics. Comput. Biol. Medicine 39 (9) (2009)
Thomas Conlon, Heather J. Ruskin, Martin Crane
Multiscaled Cross-Correlation Dynamics in Financial Time-Series. Adv. Complex Syst. 12 (4-5) (2009)
D. Hecquet, Heather J. Ruskin, Martin Crane
Response to the comments by Bernaschi et al. on 'Optimisation and parallelisation strategies for Monte Carlo simulation of HIV infection'. Comput. Biol. Medicine 38 (2) (2008)
Grainne Kerr, Heather J. Ruskin, Martin Crane, Padraig Doolan
Techniques for clustering gene expression data. Comput. Biol. Medicine 38 (3) (2008)
Heather J. Ruskin, Ana Barat, Ludmila Sarbu
Novel Database for Genetic and Epigenetic Mechanisms in Colon Cancer. ERCIM News 2008 (73) (2008)
Dimitri Perrin, Heather J. Ruskin, Martin Crane, Ray Walshe
Epigenetic Modelling. ERCIM News 2008 (72) (2008)
Ana Barat, Heather J. Ruskin, Martin Crane
3D Multi-agent models for protein release from PLGA spherical particles with complex inner morphologies. Theory Biosci. 127 (2) (2008)
D. Hecquet, Heather J. Ruskin, Martin Crane
Optimisation and parallelisation strategies for Monte Carlo simulation of HIV infection. Comput. Biol. Medicine 37 (5) (2007)
Puspita Deo, Heather J. Ruskin
Performance Evaluation of Traffic at Urban Single-Lane Junctions and Roundabouts. ERCIM News 2007 (68) (2007)
Niall M. McMahon, Martin Crane, Heather J. Ruskin, L. Crane
The importance of boundary conditions in the simulation of dissolution in the USP dissolution apparatus. Simul. Model. Pract. Theory 15 (3) (2007)
Puspita Deo, Heather J. Ruskin
Comparison of Homogeneous and Heterogeneous Motorised Traffic at Signalised and Two-Way Stop Control Single Lane Intersection. ICCSA (1) (2006)
Dimitri Perrin, Heather J. Ruskin, John Burns, Martin Crane
An Agent-Based Approach to Immune Modelling. ICCSA (1) (2006)
Ana Barat, Heather J. Ruskin, Martin Crane
Probabilistic methods for drug dissolution. Part 2. Modelling a soluble binary drug delivery system dissolving in vitro. Simul. Model. Pract. Theory 14 (7) (2006)
Puspita Deo, Heather J. Ruskin
Simulation of Heterogeneous Motorised Traffic at a Signalised Intersection. ACRI (2006)
Ana Barat, Heather J. Ruskin, Martin Crane
Probabilistic models for drug dissolution. Part 1. Review of Monte Carlo and stochastic cellular automata approaches. Simul. Model. Pract. Theory 14 (7) (2006)
Heather J. Ruskin, John Burns
Network Emergence in Immune System Shape Space. ICCSA (2) (2005)
John Burns, Heather J. Ruskin
Diversity emergence and dynamics during primary immune response: a shape space, physical space model. Theory Biosci. 123 (2) (2004)
Karl Podesta, Martin Crane, Heather J. Ruskin
A Sequence-Focused Parallelisation of EMBOSS on a Cluster of Workstations. ICCSA (3) (2004)
John Burns, Heather J. Ruskin
Network Topology in Immune System Shape Space. International Conference on Computational Science (2004)
Yu Feng, Heather J. Ruskin, Yongle Liu
Multiple Parameterisation of Human Immune Response in HIV: Many-Cell Models. ICCSA (3) (2004)
John Burns, Heather J. Ruskin
A Stochastic Model of the Effector T Cell Lifecycle. ACRI (2004)
John Burns, Heather J. Ruskin
A Model of Immune Suppression and Repertoire Evolution. International Conference on Computational Science (2003)
Ruili Wang, Heather J. Ruskin
Modelling Traffic Flow at a Multilane Intersection. ICCSA (1) (2003)
Yongle Liu, Heather J. Ruskin
A Mesoscopic Approach to Modeling Immunological Memory. International Conference on Computational Science (1) (2002)
Heather J. Ruskin, Ruili Wang
Modeling Traffic Flow at an Urban Unsignalized Intersection. International Conference on Computational Science (1) (2002)
Rachel Mannion, Heather J. Ruskin, R. B. Pandey
Effects of viral mutation on cellular dynamics in a monte carlo simulation of HIV immune response model in three dimensions. Theory Biosci. 121 (2) (2002)
Yu Feng, Heather J. Ruskin, Bao Zhu
Virtual Phase Dynamics for Constrained Geometries in a Soap Froth. International Conference on Computational Science (1) (2002)
Rachel Mannion, Heather J. Ruskin, R. B. Pandey
Effect of mutation on helper T-cells and viral population: A computer simulation model for HIV. Theory Biosci. 119 (1) (2000)
Rachel Mannion, Heather J. Ruskin, R. B. Pandey
A monte carlo approach to population dynamics of cells in a HIV immune response model. Theory Biosci. 119 (2) (2000)