Tommaso Mazza

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 10

Top Topics

Predictive Power

Motif Discovery

Subgraph Isomorphism

Top Venues

Briefings Bioinform.

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Pietro Hiram Guzzi, Francesco Petrizzelli, Tommaso Mazza
Disease spreading modeling and analysis: a survey. Briefings Bioinform. 23 (4) (2022)
Francesco Chiodo, Mario Torchia, Enza Messina, Elisabetta Fersini, Tommaso Mazza, Pietro Hiram Guzzi
A novel framework based on network embedding for the simulation and analysis of disease progression. BIBM (2022)
Francesco Petrizzelli, Pietro Hiram Guzzi, Tommaso Mazza
Beyond COVID-19 Pandemic: Topology-aware optimisation of vaccination strategy for minimising virus spreading. CoRR (2022)
Laura Fancello, Alessandro Guida, Gianmaria Frige, Arnaud Céol, Gabriele Babini, Giovanni Luca Scaglione, Mario Zanfardino, Tommaso Mazza, Lorenzo Ferrando, Pier Giuseppe Pelicci, Luca Mazzarella
TMBleR: a bioinformatic tool to optimize TMB estimation and predictive power. Bioinform. 38 (6) (2022)
Francesco Petrizzelli, Tommaso Biagini, Salvatore Daniele Bianco, Niccolò Liorni, Alessandro Napoli, Stefano Castellana, Tommaso Mazza
Connecting the dots: A practical evaluation of web-tools for describing protein dynamics as networks. Frontiers Bioinform. 2 (2022)
Stefano Castellana, Tommaso Biagini, Luca Parca, Francesco Petrizzelli, Salvatore Daniele Bianco, Angelo Luigi Vescovi, Massimo Carella, Tommaso Mazza
A comparative benchmark of classic DNA motif discovery tools on synthetic data. Briefings Bioinform. 22 (6) (2021)
Stefano Castellana, Tommaso Biagini, Francesco Petrizzelli, Luca Parca, Noemi Panzironi, Viviana Caputo, Angelo L. Vescovi, Massimo Carella, Tommaso Mazza
MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits. Nucleic Acids Res. 49 (Database-Issue) (2021)
Daniele Capocefalo, Juliana O. Pereira, Tommaso Mazza, Ferenc Jordán
Food Web Topology and Nested Keystone Species Complexes. Complex. 2018 (2018)
Tommaso Biagini, Giovanni Chillemi, Gianluigi Mazzoccoli, Alessandro Grottesi, Caterina Fusilli, Daniele Capocefalo, Stefano Castellana, Angelo L. Vescovi, Tommaso Mazza
Molecular dynamics recipes for genome research. Briefings Bioinform. 19 (5) (2018)
Stefano Castellana, Caterina Fusilli, Gianluigi Mazzoccoli, Tommaso Biagini, Daniele Capocefalo, Massimo Carella, Angelo L. Vescovi, Tommaso Mazza
High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE. PLoS Comput. Biol. 13 (6) (2017)
Tommaso Mazza, Caterina Fusilli, Chiara Saracino, Gianluigi Mazzoccoli, Francesca Tavano, Manlio Vinciguerra, Valerio Pazienza
Functional Impact of Autophagy-Related Genes on the Homeostasis and Dynamics of Pancreatic Cancer Cell Lines. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (3) (2015)
Tommaso Mazza, Stefano Castellana
Multi-Sided Compression Performance Assessment of ABI SOLiD WES Data. Algorithms 6 (2) (2013)
Salvatore Menniti, Emanuele Castagna, Tommaso Mazza
Estimating the global density of graphs by a sparseness index. Appl. Math. Comput. 224 (2013)
Tommaso Mazza, Stefano Castellana, Angelo Andriulli, Charles Auffray, Manlio Vinciguerra, Valerio Pazienza
Affinity analysis of differentially expressed genes in hepatocytes expressing HCV core genotype 1b or 3a. Biosyst. 114 (1) (2013)
Stefano Castellana, Marta Romani, Enza Maria Valente, Tommaso Mazza
A solid quality-control analysis of AB SOLiD short-read sequencing data. Briefings Bioinform. 14 (6) (2013)
Stefano Castellana, Tommaso Mazza
Congruency in the prediction of pathogenic missense mutations: state-of-the-art web-based tools. Briefings Bioinform. 14 (4) (2013)
Kaushik R. Chowdhury, Dave Cavalcanti, Mostafa El-Said, Tommaso Mazza, Chittabrata Ghosh
Modeling and Simulation of Smart and Green Computing Systems. Computer 45 (9) (2012)
Erik Dassi, A. Malossini, Angela Re, Tommaso Mazza, Toma Tebaldi, Luigi Caputi, Alessandro Quattrone
AURA: Atlas of UTR Regulatory Activity. Bioinform. 28 (1) (2012)
Tommaso Mazza
High Performance Computational Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Tommaso Mazza, Paolo Ballarini, Rosita Guido, Davide Prandi
The Relevance of Topology in Parallel Simulation of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (3) (2012)
Tommaso Mazza, Davide Prandi
Stability analysis of biological network topologies during stochastic simulation. SimuTools (2011)
Tommaso Mazza
Editorial: Accelerating systems biology. Briefings Bioinform. 11 (3) (2010)
Tommaso Mazza, Alessandro Romanel, Ferenc Jordán
Estimating the divisibility of complex biological networks by sparseness indices. Briefings Bioinform. 11 (3) (2010)
Tommaso Mazza, Gennaro Iaccarino, Corrado Priami
Snazer: the simulations and networks analyzer. BMC Syst. Biol. 4 (2010)
Tommaso Mazza, Matteo Cavaliere
Cell Cycle and Tumor Growth in Membrane Systems with Peripheral Proteins. Electron. Notes Theor. Comput. Sci. 227 (2009)
Paolo Ballarini, Tommaso Mazza, Alida Palmisano, Attila Csikász-Nagy
Studying Irreversible Transitions in a Model of Cell Cycle Regulation. Electron. Notes Theor. Comput. Sci. 232 (2009)
Paolo Ballarini, Michele Forlin, Tommaso Mazza, Davide Prandi
Efficient Parallel Statistical Model Checking of Biochemical Networks PDMC (2009)
Paolo Ballarini, Rosita Guido, Tommaso Mazza, Davide Prandi
Taming the complexity of biological pathways through parallel computing. Briefings Bioinform. 10 (3) (2009)
Attila Csikász-Nagy, Adrien Fauré, Roberto Larcher, Paola Lecca, Ivan Mura, Ferenc Jordán, Alida Palmisano, Alessandro Romanel, Sean Sedwards, Heike Siebert, Sylvain Soliman, Denis Thieffry, Judit Zámborszky, Tommaso Mazza, Paolo Ballarini
Analyzing various models of Circadian Clock and Cell Cycle coupling. Formal Methods in Molecular Biology (2009)
Gennaro Iaccarino, Tommaso Mazza
Fastest parallel molecular algorithms for the elliptic curve discrete logarithm problem over GF(2n). BADS@ICAC (2009)
Lorenzo Dematté, Tommaso Mazza
On Parallel Stochastic Simulation of Diffusive Systems. CMSB (2008)
Sean Sedwards, Tommaso Mazza
Cyto-Sim: a formal language model and stochastic simulator of membrane-enclosed biochemical processes. Bioinform. 23 (20) (2007)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
Using ontologies for preprocessing and mining spectra data on the Grid. Future Gener. Comput. Syst. 23 (1) (2007)
Tommaso Mazza
Towards a Complete Covering of SBML Functionalities. Workshop on Membrane Computing (2007)
Giuditta Franco, Pietro Hiram Guzzi, Vincenzo Manca, Tommaso Mazza
Mitotic Oscillators as MP Graphs. Workshop on Membrane Computing (2006)
Pietro Hiram Guzzi, Mario Cannataro, Marco Gaspari, Tommaso Mazza, Barbara Quaresima, Pierangelo Veltri, Francesco Saverio Costanzo
Analysis and Classification of Proteomics Data, a Case Study. CBMS (2006)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
Managing ontologies for Grid computing. Multiagent Grid Syst. 2 (1) (2006)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri
MS-Analyzer: Intelligent Preprocessing, Management, and Data Mining Analysis of Mass Spectrometry Data on the Grid. SKG (2005)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
Preprocessing of Mass Spectrometry Proteomics Data on the Grid. CBMS (2005)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
Using Ontologies in PROTEUS for Modeling Proteomics Data Mining Applications. HealthGrid (2005)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
Algorithms and Databases in Bioinformatics: Towards a Proteomic Ontology. ITCC (1) (2005)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Giuseppe Tradigo, Pierangelo Veltri
On the Preprocessing of Mass Spectrometry Proteomics Data. WIRN/NAIS (2005)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri
Distributed Management of Ontologies on the Grid. WETICE (2005)
Francesco Baudi, Mario Cannataro, Rita Casadonte, Francesco Costanzo, Giovanni Cuda, Maria Concetta Faniello, Marco Gaspari, Pietro Hiram Guzzi, Tommaso Mazza, Barbara Quaresima, Pierosandro Tagliaferri, Giuseppe Tradigo, Pierangelo Veltri, Salvatore Venuta
Mass Spectrometry Data Analysis for Early Detection of Inherited Breast Cancer. WIRN (2004)
Mario Cannataro, Pietro Hiram Guzzi, Tommaso Mazza, Pierangelo Veltri
Using PROTEUS for Modeling Data Mining Analysis of Proteomics Experiments on the Grid. OTM Workshops (2004)