A comparative benchmark of classic DNA motif discovery tools on synthetic data.
Stefano CastellanaTommaso BiaginiLuca ParcaFrancesco PetrizzelliSalvatore Daniele BiancoAngelo Luigi VescoviMassimo CarellaTommaso MazzaPublished in: Briefings Bioinform. (2021)
Keyphrases
- synthetic data
- motif discovery
- dna sequences
- biological sequences
- binding sites
- real world
- motif finding
- real image data
- data sets
- sequence analysis
- pattern discovery
- data mining tasks
- computational biology
- sequence data
- transcription factors
- multiobjective optimization
- dna binding
- transcription factor binding sites
- end users
- text mining
- gene expression
- multi dimensional
- data mining techniques
- high throughput
- preprocessing
- genetic algorithm
- databases
- database
- data mining algorithms