Heike Siebert

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 13

Top Topics

Statistical Analyses

Graph Representations

Top Venues

Publications

Robert Schwieger, Heike Siebert
Structure and behavior in Boolean monotonic model pools. Biosyst. 214 (2022)
Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert
Control in Boolean Networks With Model Checking. Frontiers Appl. Math. Stat. 8 (2022)
Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert
Control Strategy Identification via Trap Spaces in Boolean Networks. CMSB (2020)
Robert Schwieger, Matías R. Bender, Heike Siebert, Christian Haase
Classifier Construction in Boolean Networks Using Algebraic Methods. CMSB (2020)
Hannes Klarner, Frederike Heinitz, Sarah Nee, Heike Siebert
Basins of Attraction, Commitment Sets, and Phenotypes of Boolean Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Melania Nowicka, Heike Siebert
Designing Distributed Cell Classifier Circuits Using a Genetic Algorithm. CMSB (2019)
Elisa Tonello, Heike Siebert
Boolean analysis of lateral inhibition. CoRR (2019)
Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis. BMC Bioinform. 20 (1) (2019)
Hannes Klarner, Alexander Bockmayr, Heike Siebert
Erratum to: Computing maximal and minimal trap spaces of Boolean networks. Nat. Comput. 17 (2) (2018)
Robert Schwieger, Heike Siebert, Susanna Röblitz
Correspondence of Trap Spaces in Different Models of Bioregulatory Networks. SIAM J. Appl. Dyn. Syst. 17 (2) (2018)
Hannes Klarner, Adam Streck, Heike Siebert
PyBoolNet: a python package for the generation, analysis and visualization of boolean networks. Bioinform. 33 (5) (2017)
Robert Schwieger, Heike Siebert
Graph Representations of Monotonic Boolean Model Pools. CMSB (2017)
Adam Streck, Kirsten Thobe, Heike Siebert
Data-driven optimizations for model checking of multi-valued regulatory networks. Biosyst. 149 (2016)
Adam Streck, Kirsten Thobe, Heike Siebert
Comparative Statistical Analysis of Qualitative Parametrization Sets. HSB (2015)
Adam Streck, Therese Lorenz, Heike Siebert
Minimization and equivalence in multi-valued logical models of regulatory networks. Nat. Comput. 14 (4) (2015)
Kaveh Yousef, Adam Streck, Christof Schütte, Heike Siebert, Regine Hengge, Max von Kleist
Logical-continuous modelling of post-translationally regulated bistability of curli fiber expression in Escherichia coli. BMC Syst. Biol. 9 (2015)
Hannes Klarner, Alexander Bockmayr, Heike Siebert
Computing maximal and minimal trap spaces of Boolean networks. Nat. Comput. 14 (4) (2015)
Adam Streck, Kirsten Thobe, Heike Siebert
Analysing Cell Line Specific EGFR Signalling via Optimized Automata Based Model Checking. CMSB (2015)
Hannes Klarner, Alexander Bockmayr, Heike Siebert
Computing Symbolic Steady States of Boolean Networks. ACRI (2014)
Adam Streck, Heike Siebert
Equivalences in Multi-valued Asynchronous Models of Regulatory Networks. ACRI (2014)
Kirsten Thobe, Adam Streck, Hannes Klarner, Heike Siebert
Model Integration and Crosstalk Analysis of Logical Regulatory Networks. CMSB (2014)
Alexander Bockmayr, Heike Siebert
Bio-Logics: Logical Analysis of Bioregulatory Networks. Programming Logics (2013)
Shahrad Jamshidi, Heike Siebert, Alexander Bockmayr
Preservation of dynamic properties in qualitative modeling frameworks for gene regulatory networks. Biosyst. 112 (2) (2013)
Hannes Klarner, Adam Streck, David Safránek, Juraj Kolcák, Heike Siebert
Parameter Identification and Model Ranking of Thomas Networks. CMSB (2012)
Hannes Klarner, Heike Siebert, Alexander Bockmayr
Time Series Dependent Analysis of Unparametrized Thomas Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (5) (2012)
Shahrad Jamshidi, Heike Siebert, Alexander Bockmayr
Comparing Discrete and Piecewise Affine Differential Equation Models of Gene Regulatory Networks. IPCAT (2012)
Hannes Klarner, Heike Siebert, Alexander Bockmayr
Parameter inference for asynchronous logical networks using discrete time series. CMSB (2011)
Sven Twardziok, Heike Siebert, Alexander Heyl
Stochasticity in reactions: a probabilistic Boolean modeling approach. CMSB (2010)
Heike Siebert
Symbolic Steady States and Dynamically Essential Subnetworks of Discrete Regulatory Networks. Formal Methods in Molecular Biology (2009)
Attila Csikász-Nagy, Adrien Fauré, Roberto Larcher, Paola Lecca, Ivan Mura, Ferenc Jordán, Alida Palmisano, Alessandro Romanel, Sean Sedwards, Heike Siebert, Sylvain Soliman, Denis Thieffry, Judit Zámborszky, Tommaso Mazza, Paolo Ballarini
Analyzing various models of Circadian Clock and Cell Cycle coupling. Formal Methods in Molecular Biology (2009)
Heike Siebert
Deriving Behavior of Boolean Bioregulatory Networks from Subnetwork Dynamics. Math. Comput. Sci. 2 (3) (2009)
Heike Siebert
Dynamical and Structural Modularity of Discrete Regulatory Networks COMPMOD (2009)
Heike Siebert
Local Structure and Behavior of Boolean Bioregulatory Networks. AB (2008)
Heike Siebert, Alexander Bockmayr
Temporal constraints in the logical analysis of regulatory networks. Theor. Comput. Sci. 391 (3) (2008)
Heike Siebert, Alexander Bockmayr
Context Sensitivity in Logical Modeling with Time Delays. CMSB (2007)
Heike Siebert, Alexander Bockmayr
Relating Attractors and Singular Steady States in the Logical Analysis of Bioregulatory Networks. AB (2007)
Heike Siebert, Alexander Bockmayr
Incorporating Time Delays into the Logical Analysis of Gene Regulatory Networks. CMSB (2006)