Annalisa Marsico

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 5

Top Topics

Convolutional Neural Networks

Protein Protein Interactions

Biological Sequences

Functional Modules

Top Venues

Briefings Bioinform.

Nat. Mach. Intell.

Publications

Marc Horlacher, Giulia Cantini, Julian Hesse, Patrick Schinke, Nicolas Goedert, Shubhankar Londhe, Lambert Moyon, Annalisa Marsico
A systematic benchmark of machine learning methods for protein-RNA interaction prediction. Briefings Bioinform. 24 (5) (2023)
Roman Schulte-Sasse, Stefan Budach, Denes Hnisz, Annalisa Marsico
Integration of multiomics data with graph convolutional networks to identify new cancer genes and their associated molecular mechanisms. Nat. Mach. Intell. 3 (6) (2021)
Roman Schulte-Sasse, Stefan Budach, Denes Hnisz, Annalisa Marsico
Graph Convolutional Networks Improve the Prediction of Cancer Driver Genes. ICANN (Workshop) (2019)
Denise Thiel, Natasa Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis. BMC Bioinform. 20 (1) (2019)
Stefan Budach, Annalisa Marsico
pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks. Bioinform. 34 (17) (2018)
Annalisa Marsico, Andreas Henschel, Christof Winter, Anne Tuukkanen, Boris Vassilev, Kerstin Scheubert, Michael Schroeder
-helical transmembrane proteins. BMC Bioinform. 11 (2010)
Annalisa Marsico, Kerstin Scheubert, Anne Tuukkanen, Andreas Henschel, Christof Winter, Rainer Winnenburg, Michael Schroeder
MeMotif: a database of linear motifs in α-helical transmembrane proteins. Nucleic Acids Res. 38 (Database-Issue) (2010)
Dirk Labudde, Annalisa Marsico, K. Tanuj Sapra, Michael Schroeder
Pattern Recognition of Single-Molecule Force Spectroscopy Data. ER Workshops (2007)
Annalisa Marsico, Kerstin Vanselow, Jing Wang, Dirk Labudde
2D Visualisation of SMFS Data on Membrane Proteins. ER (Tutorials, Posters, Panels & Industrial Contributions) (2007)
Annalisa Marsico, Dirk Labudde, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder
A novel pattern recognition algorithm to classify membrane protein unfolding pathways with high-throughput single-molecule force spectroscopy. Bioinform. 23 (2) (2007)
Frank Dressel, Annalisa Marsico, Anne Tuukkanen, Michael Schroeder, Dirk Labudde
Understanding of SMFS Barriers by Means of Energy Profiles. German Conference on Bioinformatics (2007)
Annalisa Marsico, K. Tanuj Sapra, Daniel J. Muller, Michael Schroeder, Dirk Labudde
A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants. CompLife (2006)