Özgün Babur

Publication Activity (10 Years)

Years Active: 2011-2021
Publications (10 Years): 5

Top Topics

Outcome Prediction

Top Venues

Database J. Biol. Databases Curation

PLoS Comput. Biol.

Publications

Özgün Babur, Augustin Luna, Anil Korkut, Funda Durupinar, Metin Can Siper, Ugur Dogrusoz, Alvaro Sebastian Vaca Jacome, Ryan Peckner, Karen E. Christianson, Jacob D. Jaffe, Paul T. Spellman, Joseph E. Aslan, Chris Sander, Emek Demir
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge. Patterns 2 (6) (2021)
Hasan Balci, Metin Can Siper, Nasim Saleh, Ilkin Safarli, Ludovic Roy, Merve Kilicarslan, Rumeysa Ozaydin, Alexander Mazein, Charles Auffray, Özgün Babur, Emek Demir, Ugur Dogrusoz
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps. Bioinform. 37 (10) (2021)
Marco Antonio Valenzuela-Escárcega, Özgün Babur, Gus Hahn-Powell, Dane Bell, Thomas Hicks, Enrique Noriega-Atala, Xia Wang, Mihai Surdeanu, Emek Demir, Clayton T. Morrison
Large-scale automated machine reading discovers new cancer-driving mechanisms. Database J. Biol. Databases Curation 2018 (2018)
Istemi Bahceci, Ugur Dogrusoz, Konnor C. La, Özgün Babur, Jianjiong Gao, Nikolaus Schultz
PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data. Bioinform. 33 (14) (2017)
Augustin Luna, Özgün Babur, Bülent Arman Aksoy, Emek Demir, Chris Sander
PaxtoolsR: pathway analysis in R using Pathway Commons. Bioinform. 32 (8) (2016)
Bülent Arman Aksoy, Emek Demir, Özgün Babur, Weiqing Wang, Xiaohong Jing, Nikolaus Schultz, Chris Sander
Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles. Bioinform. 30 (14) (2014)
Özgün Babur, Bülent Arman Aksoy, Igor V. Rodchenkov, Selçuk Onur Sümer, Chris Sander, Emek Demir
Pattern search in BioPAX models. Bioinform. 30 (1) (2014)
Emek Demir, Özgün Babur, Igor V. Rodchenkov, Bülent Arman Aksoy, Ken I. Fukuda, Benjamin E. Gross, Selçuk Onur Sümer, Gary D. Bader, Chris Sander
Using Biological Pathway Data with Paxtools. PLoS Comput. Biol. 9 (9) (2013)
Ethan G. Cerami, Benjamin E. Gross, Emek Demir, Igor V. Rodchenkov, Özgün Babur, Nadia Anwar, Nikolaus Schultz, Gary D. Bader, Chris Sander
Pathway Commons, a web resource for biological pathway data. Nucleic Acids Res. 39 (Database-Issue) (2011)