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Gary An
ORCID
Publication Activity (10 Years)
Years Active: 2007-2023
Publications (10 Years): 11
Top Topics
Simulation Models
Reinforcement Learning
Multiscale
Computational Models
Top Venues
CoRR
PLoS Comput. Biol.
J. Comput. Biol.
BMC Bioinform.
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Publications
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Gary An
,
Chase Cockrell
Generating synthetic multi-dimensional molecular-mediator time series data for artificial intelligence-based disease trajectory forecasting and drug development digital twins: Considerations.
CoRR
(2023)
Chase Cockrell
,
Scott Christley
,
Gary An
Facilitating automated conversion of scientific knowledge into scientific simulation models with the Machine Assisted Generation, Calibration, and Comparison (MAGCC) Framework.
CoRR
(2022)
Reinhard C. Laubenbacher
,
Anna Niarakis
,
Tomás Helikar
,
Gary An
,
B. Shapiro
,
Rahuman S. Malik-Sheriff
,
T. J. Sego
,
Adam C. Knapp
,
Paul Macklin
,
James A. Glazier
Building digital twins of the human immune system: toward a roadmap.
npj Digit. Medicine
5 (2022)
Chase Cockrell
,
Jonathan Ozik
,
Nick Collier
,
Gary An
Nested active learning for efficient model contextualization and parameterization: pathway to generating simulated populations using multi-scale computational models.
Simul.
97 (4) (2021)
Brenden K. Petersen
,
Jiachen Yang
,
Will S. Grathwohl
,
Chase Cockrell
,
Claudio Santiago
,
Gary An
,
Daniel M. Faissol
Deep Reinforcement Learning and Simulation as a Path Toward Precision Medicine.
J. Comput. Biol.
26 (6) (2019)
Jonathan Ozik
,
Nicholson T. Collier
,
Justin M. Wozniak
,
Charles M. Macal
,
Gary An
Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework.
IEEE Trans. Comput. Soc. Syst.
5 (3) (2018)
Chase Cockrell
,
Gary An
Examining the controllability of sepsis using genetic algorithms on an agent-based model of systemic inflammation.
PLoS Comput. Biol.
14 (2) (2018)
Brenden K. Petersen
,
Jiachen Yang
,
Will S. Grathwohl
,
Chase Cockrell
,
Claudio Santiago
,
Gary An
,
Daniel M. Faissol
Precision medicine as a control problem: Using simulation and deep reinforcement learning to discover adaptive, personalized multi-cytokine therapy for sepsis.
CoRR
(2018)
Jonathan Ozik
,
Nicholson T. Collier
,
Justin M. Wozniak
,
Charles M. Macal
,
Chase Cockrell
,
Samuel H. Friedman
,
Ahmadreza Ghaffarizadeh
,
Randy W. Heiland
,
Gary An
,
Paul Macklin
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.
BMC Bioinform.
(18) (2018)
Scott Christley
,
Chase Cockrell
,
Gary An
Computational Studies of the Intestinal Host-Microbiota Interactome.
Comput.
3 (1) (2015)
Cordelia Ziraldo
,
Alexey Solovyev
,
Ana Allegretti
,
Shilpa Krishnan
,
M. Kristi Henzel
,
Gwendolyn A. Sowa
,
David M. Brienza
,
Gary An
,
Qi Mi
,
Yoram Vodovotz
A Computational, Tissue-Realistic Model of Pressure Ulcer Formation in Individuals with Spinal Cord Injury.
PLoS Comput. Biol.
11 (6) (2015)
Chase Cockrell
,
Scott Christley
,
Gary An
Investigation of Inflammation and Tissue Patterning in the Gut Using a Spatially Explicit General-Purpose Model of Enteric Tissue (SEGMEnT).
PLoS Comput. Biol.
10 (3) (2014)
Chase Cockrell
,
Scott Christley
,
Gary An
,
Eugene Chang
,
Marc Ward
Examining the dynamics of epithelial metaplasia and pouchitis in an ileal pouch with a spatially-explicit computational multi-scale gut model (MSGM).
SpringSim (ADS)
(2013)
Jeremy D. Scheff
,
Panteleimon D. Mavroudis
,
Panagiota T. Foteinou
,
Gary An
,
Steve E. Calvano
,
John Doyle
,
Thomas E. Dick
,
Stephen F. Lowry
,
Yoram Vodovotz
,
Ioannis P. Androulakis
A multiscale modeling approach to inflammation: A case study in human endotoxemia.
J. Comput. Phys.
244 (2013)
Samuel Alberts
,
Michael K. Keenan
,
Roshan M. D'Souza
,
Gary An
Data-parallel techniques for simulating a mega-scale agent-based model of systemic inflammatory response syndrome on graphics processing units.
Simul.
88 (8) (2012)
Scott Christley
,
Gary An
A proposal for augmenting biological model construction with a semi-intelligent computational modeling assistant.
Comput. Math. Organ. Theory
18 (4) (2012)
Scott Christley
,
Gary An
A proposed method for dynamic knowledge representation via agent-directed composition from biomedical and simulation ontologies: an example using gut mucus layer dynamics.
SpringSim (ADS)
(2011)
Alexey Solovyev
,
Maxim Mikheev
,
Leming Zhou
,
Joyeeta Dutta-Moscato
,
Cordelia Ziraldo
,
Gary An
,
Yoram Vodovotz
,
Qi Mi
SPARK: a framework for multi-scale agent-based biomedical modeling.
SpringSim
(2010)
Emilia Apostolova
,
Sean Neilan
,
Gary An
,
Noriko Tomuro
,
Steven L. Lytinen
Djangology: A Light-weight Web-based Tool for Distributed Collaborative Text Annotation.
LREC
(2010)
Alexey Solovyev
,
Maxim Mikheev
,
Leming Zhou
,
Joyeeta Dutta-Moscato
,
Cordelia Ziraldo
,
Gary An
,
Yoram Vodovotz
,
Qi Mi
SPARK: A Framework for Multi-Scale Agent-Based Biomedical Modeling.
Int. J. Agent Technol. Syst.
2 (3) (2010)
Jesper Tegnér
,
Albert Compte
,
Charles Auffray
,
Gary An
,
Gunnar Cedersund
,
Gilles Clermont
,
Boris S. Gutkin
,
Zoltán N. Oltvai
,
Klaas Enno Stephan
,
Randy Thomas
,
Pablo Villoslada
Computational disease modeling - fact or fiction?
BMC Syst. Biol.
3 (2009)
Yoram Vodovotz
,
Márie Csete
,
John Bartels
,
Steven Chang
,
Gary An
Translational Systems Biology of Inflammation.
PLoS Comput. Biol.
4 (4) (2008)
Wayne W. Wakeland
,
Louis M. Macovsky
,
Gary An
A hybrid simulation model for studying acute inflammatory response.
SpringSim (2)
(2007)