Filippo Castiglione

ORCID

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 30

Top Venues

BIBM

BMC Bioinform.

Briefings Bioinform.

Balt. J. Mod. Comput.

University of Cologne, Germany (PHD)

Education History

University of Cologne, Germany

PHD

Publications

Filippo Castiglione, Peteris Daugulis, Emiliano Mancini, Rik Oldenkamp, Constance Schultsz, Vija Vagale
Predicting Antimicrobial Resistance Trends Combining Standard Linear Algebra with Machine Learning Algorithms. Balt. J. Mod. Comput. 12 (1) (2024)
Reinhard C. Laubenbacher, Fred Adler, Gary An, Filippo Castiglione, Stephen Eubank, Luis L. Fonseca, James A. Glazier, Tomás Helikar, Marti Jett-Tilton, Denise Kirschner, Paul Macklin, Borna Mehrad, Beth Moore, Virginia Pasour, Ilya Shmulevich, Amber Smith, Isabel Voigt, Thomas E. Yankeelov, Tjalf Ziemssen
Toward mechanistic medical digital twins: some use cases in immunology. Frontiers Digit. Health 6 (2024)
Raghvendra Mall, Ankita Singh, Chirag N. Patel, Gregory Guirimand, Filippo Castiglione
VISH-Pred: an ensemble of fine-tuned ESM models for protein toxicity prediction. Briefings Bioinform. 25 (4) (2024)
Étienne Goffinet, Raghvendra Mall, Ankita Singh, Rahul Kaushik, Filippo Castiglione
MATE-Pred: Multimodal Attention-based TCR-Epitope interaction Predictor. CoRR (2024)
Enrico Mastrostefano, Alessandro Ravoni, Elia Onofri, Paolo Tieri, Filippo Castiglione
Harnessing computational models to uncover the role of the immune system in tuberculosis treatment. BIBM (2023)
Maria Concetta Palumbo, Albert A. de Graaf, Micaela Morettini, Paolo Tieri, Shaji Krishnan, Filippo Castiglione
A computational model of the effects of macronutrients absorption and physical exercise on hormonal regulation and metabolic homeostasis. Comput. Biol. Medicine 163 (2023)
Paola Stolfi, Davide Vergni, Filippo Castiglione
An agent-based multi-level model to study the spread of gonorrhea in different and interacting risk groups. Frontiers Appl. Math. Stat. 9 (2023)
Filippo Castiglione, Christine Nardini, Elia Onofri, Marco Pedicini, Paolo Tieri
Explainable Drug Repurposing Approach From Biased Random Walks. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Paola Stolfi, Davide Vergni, Rik Oldenkamp, Constance Schultsz, Emiliano Mancini, Filippo Castiglione
An agent-based multi-level model to study the spread of antimicrobial-resistant gonorrhoea. BIBM (2022)
Peteris Daugulis, Vija Vagale, Emiliano Mancini, Filippo Castiglione
A PCA-based Data Prediction Method. Balt. J. Mod. Comput. 10 (1) (2022)
Enrico Mastrostefano, Paola Stolfi, Filippo Castiglione
A data-driven model for the generation of Virtual Cohorts. BIBM (2021)
Haiying Wang, Estelle Pujos-Guillot, Blandine Comte, Joao Luis de Miranda, Vojtech Spiwok, Ivan Chorbev, Filippo Castiglione, Paolo Tieri, Steven Watterson, Roisin McAllister, Tiago De Melo Malaquias, Massimiliano Zanin, Taranjit Singh Rai, Huiru Zheng
Deep learning in systems medicine. Briefings Bioinform. 22 (2) (2021)
Paola Stolfi, Filippo Castiglione
Emulating complex simulations by machine learning methods. BMC Bioinform. (14) (2021)
Paola Stolfi, Filippo Castiglione
A functional data analysis approach to assess the prognostic value of SARS-CoV-2 infections surrogate data. BIBM (2021)
Paola Stolfi, Filippo Castiglione
Emulation of dynamic multi-output simulator of risk of type-2 diabetes. BIBM (2020)
Paola Stolfi, Ilaria Valentini, Maria Concetta Palumbo, Paolo Tieri, Andrea Grignolio, Filippo Castiglione
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices. BMC Bioinform. (17) (2020)
Alessandro Celestini, Marco Cianfriglia, Enrico Mastrostefano, Alessandro Palma, Filippo Castiglione, Paolo Tieri
Critical nodes reveal peculiar features of human essential genes and protein interactome. BIBM (2019)
Massimiliano Zanin, Ivan Chorbev, Blaz Stres, Egils Stalidzans, Julio Vera, Paolo Tieri, Filippo Castiglione, Derek Groen, Huiru Zheng, Jan Baumbach, Johannes A. Schmid, José Basilio, Peter Klimek, Natasa Debeljak, Damjana Rozman, Harald H. H. W. Schmidt
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine. Briefings Bioinform. 20 (3) (2019)
Paola Stolfi, Ilaria Valentini, Maria Concetta Palumbo, Paolo Tieri, Andrea Grignolio, Filippo Castiglione
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices. BIBM (2019)
Alva Presbitero, Emiliano Mancini, Filippo Castiglione, Valeria V. Krzhizhanovskaya, Rick Quax
Game of neutrophils: modeling the balance between apoptosis and necrosis. BMC Bioinform. (6) (2019)
Vinca Prana, Paolo Tieri, Maria Concetta Palumbo, Emiliano Mancini, Filippo Castiglione
Modeling the Effect of High Calorie Diet on the Interplay between Adipose Tissue, Inflammation, and Diabetes. Comput. Math. Methods Medicine 2019 (2019)
Maria Concetta Palumbo, Micaela Morettini, Paolo Tieri, Fasma Diele, Massimo Sacchetti, Filippo Castiglione
Personalizing physical exercise in a computational model of fuel homeostasis. PLoS Comput. Biol. 14 (4) (2018)
Leandro Martins de Freitas, Tatiani Uceli Maioli, Henrique Assis Lopes de Ribeiro, Paolo Tieri, Filippo Castiglione
A mathematical model of Chagas disease infection predicts inhibition of the immune system. BIBM (2018)
Henrique Assis Lopes de Ribeiro, Tatiani Uceli Maioli, Leandro Martins de Freitas, Paolo Tieri, Filippo Castiglione
A mathematical model of murine macrophage infected with Leishmania sp. BIBM (2018)
Alva Presbitero, Emiliano Mancini, Filippo Castiglione, Valeria V. Krzhizhanovskaya, Rick Quax
Evolutionary Game Theory Can Explain the Choice Between Apoptotic and Necrotic Pathways in Neutrophils. BIBM (2018)
Marco Pedicini, Maria Concetta Palumbo, Filippo Castiglione
Computing Hierarchical Transition Graphs of Asynchronous Genetic Regulatory Networks. WIVACE (2017)
Alice Madonia, Cristiano Melchiorri, Simone Bonamano, Marco Marcelli, Chiara Bulfon, Filippo Castiglione, Marco Galeotti, Donatella Volpatti, Francesco Mosca, Pietro-Giorgio Tiscar, Nicla Romano
Computational modeling of immune system of the fish for a more effective vaccination in aquaculture. Bioinform. 33 (19) (2017)
Filippo Castiglione, Dario Ghersi, Franco Celada
In-silico analysis of the "memory anti-Naïve" effect in anti-viral cross-reactive responses. BIBM (2017)
Filippo Castiglione, Paolo Tieri, Alessandro Palma, Abdul Salam Jarrah
Statistical ensemble of gene regulatory networks of macrophage differentiation. BMC Bioinform. 17 (S-19) (2016)
Antonio Cappuccio, Paolo Tieri, Filippo Castiglione
Multiscale modelling in immunology: a review. Briefings Bioinform. 17 (3) (2016)
Eugenia Galeota, Caius Gavrila, Filippo Castiglione, Massimo Bernaschi, Gianni Cesareni
The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells. BMC Syst. Biol. 9 (S-3) (2015)
Paolo Tieri, Vinca Prana, Teresa Colombo, Daniele Santoni, Filippo Castiglione
Multi-scale Simulation of T Helper Lymphocyte Differentiation. BSB (2014)
Matteo Rucco, Filippo Castiglione, Emanuela Merelli, Marco Pettini
Characterisation of the Idiotypic Immune Network Through Persistent Entropy. ECCS (2014)
Joachim von Eichborn, Anna Lena Woelke, Filippo Castiglione, Robert Preissner
VaccImm: simulating peptide vaccination in cancer therapy. BMC Bioinform. 14 (2013)
Filippo Castiglione, Francesco Pappalardo
Computational Biology Modeling across Different Scales. SIMULTECH (2013)
Filippo Castiglione, Francesca Mantile, Piergiuseppe De Berardinis, Antonella Prisco
How the Interval between Prime and Boost Injection Affects the Immune Response in a Computational Model of the Immune System. Comput. Math. Methods Medicine 2012 (2012)
Benjamin Ribba, Hanane El Garch, Sylvie Brunet, Emmanuel Grenier, Filippo Castiglione, H. Poulet, Philippe Vanhems
Time-Course Analysis of Main Markers of Primary Infection in Cats with the Feline Immunodeficiency Virus. Comput. Math. Methods Medicine 2012 (2012)
Nicolas Rapin, Ole Lund, Filippo Castiglione
Immune system simulation online. Bioinform. 27 (14) (2011)
Marco Pedicini, Fredrik Barrenäs, Trevor Clancy, Filippo Castiglione, Eivind Hovig, Kartiek Kanduri, Daniele Santoni, Mikael Benson
Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation. PLoS Comput. Biol. 6 (12) (2010)
Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings Bioinform. 10 (3) (2009)
Filippo Castiglione, Francesco Pappalardo
Toward Multi-organs Simulations of Immune-Pathogen Interactions. ISDA (2009)
Valentina Baldazzi, Paola Paci, Massimo Bernaschi, Filippo Castiglione
Modeling lymphocyte homing and encounters in lymph nodes. BMC Bioinform. 10 (2009)
Daniele Santoni, Marco Pedicini, Filippo Castiglione
Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions. Bioinform. 24 (11) (2008)
Paola Paci, Filippo Castiglione, Massimo Bernaschi, Valentina Baldazzi
A Discrete/Continuous Model of Anti-HIV Response and Therapy. UKSim (2008)
Massimo Bernaschi, Filippo Castiglione
Comments on "Optimization and parallelization strategies for Monte Carlo simulation of HIV infection" by D. Hecquet, H.J. Ruskin and M. Crane Computers in Biology and Medicine, volume 37, 691, 2007. Comput. Biol. Medicine 38 (2) (2008)
Filippo Castiglione, Francesco Pappalardo, Massimo Bernaschi, Santo Motta
Optimization of HAART with genetic algorithms and agent-based models of HIV infection. Bioinform. 23 (24) (2007)
Massimo Bernaschi, Filippo Castiglione, Alessandra Ferranti, Caius Gavrila, Michele Tinti, Gianni Cesareni
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics. BMC Bioinform. 8 (S-1) (2007)
Filippo Castiglione, Karen Duca, Abdul Salam Jarrah, Reinhard C. Laubenbacher, Donna Hochberg, David Thorley-Lawson
Simulating Epstein-Barr virus infection with C-ImmSim. Bioinform. 23 (11) (2007)
Filippo Castiglione
Agent based modeling. Scholarpedia 1 (10) (2006)
Filippo Castiglione, Sauro Succi
Simulating the G-protein cAMP pathway with a two-compartment reactive lattice gas. Theory Biosci. 123 (4) (2005)
Federico Massaioli, Filippo Castiglione, Massimo Bernaschi
OpenMP parallelization of agent-based models. Parallel Comput. 31 (10-12) (2005)
Francesco Pappalardo, Pierluigi Lollini, Filippo Castiglione, Santo Motta
Modeling and simulation of cancer immunoprevention vaccine. Bioinform. 21 (12) (2005)
Filippo Castiglione, Benedetto Piccoli
Optimal control in a model of dendritic cell transfection cancer immunotherapy. CDC (2004)
Filippo Castiglione, Federico Toschi, Massimo Bernaschi, Sauro Succi, Roberta Benedetti, Brunangelo Falini, Arcangelo Liso
Computational modeling of the immune response to tumor antigens: implications for vaccination. CDC (2004)
Filippo Castiglione
Forecasting Price increments using an Artificial Neural Network. Adv. Complex Syst. 4 (1) (2001)
Filippo Castiglione, Santo Motta, Giuseppe Nicosia
Pattern recognition by primary and secondary response of an Artificial Immune System. Theory Biosci. 120 (2) (2001)
Massimo Bernaschi, Filippo Castiglione
Design and implementation of an immune system simulator. Comput. Biol. Medicine 31 (5) (2001)
Filippo Castiglione, Francesco Castiglione
Estimating the Keratoconus Index from Ultrasound Images of the Human Cornea. IEEE Trans. Medical Imaging 19 (12) (2000)
Massimo Bernaschi, Filippo Castiglione, Sauro Succi
A high performance simulator of the immune response. Future Gener. Comput. Syst. 15 (3) (1999)
Massimo Bernaschi, Filippo Castiglione, Sauro Succi
A Parallel Simulator of the Immune Response. HPCN Europe (1998)
Massimo Bernaschi, Filippo Castiglione, Sauro Succi
A parallel algorithm for the simulation of the Immune Response. WAE (1997)

Filippo Castiglione.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Filippo Castiglione