Daniele Santoni

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 9

Top Topics

Joint Distribution

Protein Interaction

Protein Structure

Top Venues

J. Chem. Inf. Model.

Publications

Claudio Arbib, Andrea D'Ascenzo, Fabrizio Rossi, Daniele Santoni
An Integer Linear Programming Model to Optimize Coding DNA Sequences By Joint Control of Transcript Indicators. J. Comput. Biol. 31 (5) (2024)
Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici
Predicting Transcription Factor Binding Sites using Transformer based Capsule Network. CoRR (2023)
Nicola Apollonio, Daniel Blankenberg, Fabio Cumbo, Paolo Giulio Franciosa, Daniele Santoni
(HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks. Bioinform. 39 (1) (2023)
Carlo Derelitto, Daniele Santoni
TRANSPARENT: a Python tool for designing transcription factor regulatory networks. Soft Comput. 27 (10) (2023)
Nicola Apollonio, Paolo Giulio Franciosa, Daniele Santoni
On function homophily of microbial Protein-Protein Interaction Networks. CoRR (2021)
Daniele Santoni
The impact of flanking sequence features on DNA CpG methylation. Comput. Biol. Chem. 92 (2021)
Duygu Dede Sener, Daniele Santoni, Giovanni Felici, Hasan Ogul
A Content-Based Retrieval Framework for Whole Metagenome Sequencing Samples. J. Integr. Bioinform. 15 (4) (2018)
Daniele Santoni, Elaheh Pourabbas
Automatic Detection of Words Associations in Texts Based on Joint Distribution of Words Occurrences. Comput. Intell. 32 (4) (2016)
Daniele Santoni, Emanuel Weitschek, Giovanni Felici
Optimal discretization and selection of features by association rates of joint distributions. RAIRO Oper. Res. 50 (2) (2016)
Paolo Tieri, Vinca Prana, Teresa Colombo, Daniele Santoni, Filippo Castiglione
Multi-scale Simulation of T Helper Lymphocyte Differentiation. BSB (2014)
Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani
Modules Identification in Protein Structures: The Topological and Geometrical Solutions. J. Chem. Inf. Model. 54 (1) (2014)
Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani
Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions. J. Chem. Inf. Model. 54 (3) (2014)
Luisa Di Paola, Paola Paci, Daniele Santoni, Micol De Ruvo, Alessandro Giuliani
Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles. J. Chem. Inf. Model. 52 (2) (2012)
Marco Pedicini, Fredrik Barrenäs, Trevor Clancy, Filippo Castiglione, Eivind Hovig, Kartiek Kanduri, Daniele Santoni, Mikael Benson
Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation. PLoS Comput. Biol. 6 (12) (2010)
Daniele Santoni, Marco Pedicini, Filippo Castiglione
Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions. Bioinform. 24 (11) (2008)