Julio Vera

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 11

Top Topics

Gene Expression Profiles

Comparative Analysis

Graph Representations

Top Venues

Briefings Bioinform.

Publications

Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Bauer, Julio Vera, Katharina Breininger, Andreas K. Maier
Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data using Graph Neural Networks. Bildverarbeitung für die Medizin (2024)
Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Katharina Breininger, Andreas Maier
Employing Graph Representations for Cell-Level Characterization of Melanoma MELC Samples. ISBI (2023)
Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Bauer, Julio Vera, Katharina Breininger, Andreas Maier
Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data Using Graph Neural Networks. CoRR (2023)
Julio Vera, Xin Lai, Andreas Baur, Michael Erdmann, Shailendra K. Gupta, Cristiano Guttà, Lucie Heinzerling, Markus V. Heppt, Philipp Maximilian Kazmierczak, Manfred Kunz, Christopher Lischer, Brigitte M. Pützer, Markus Rehm, Christian Ostalecki, Jimmy Retzlaff, Stephan Witt, Olaf Wolkenhauer, Carola Berking
Melanoma 2.0. Skin cancer as a paradigm for emerging diagnostic technologies, computational modelling and artificial intelligence. Briefings Bioinform. 23 (6) (2022)
Luis Carlos Rivera Monroy, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Andreas K. Maier
Melanoma Segmentation and Classification Employing Imaging and Graph Encodings. CHASE (2022)
Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Katharina Breininger, Andreas K. Maier
Employing Graph Representations for Cell-level Characterization of Melanoma MELC Samples. CoRR (2022)
Nivedita Singh, Martin Eberhardt, Olaf Wolkenhauer, Julio Vera, Shailendra K. Gupta
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma. BMC Bioinform. 21 (1) (2020)
Massimiliano Zanin, Ivan Chorbev, Blaz Stres, Egils Stalidzans, Julio Vera, Paolo Tieri, Filippo Castiglione, Derek Groen, Huiru Zheng, Jan Baumbach, Johannes A. Schmid, José Basilio, Peter Klimek, Natasa Debeljak, Damjana Rozman, Harald H. H. W. Schmidt
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine. Briefings Bioinform. 20 (3) (2019)
Hojjat Naderi-Meshkin, Xin Lai, Raheleh Amirkhah, Julio Vera, John E. J. Rasko, Ulf Schmitz
Exosomal lncRNAs and cancer: connecting the missing links. Bioinform. 35 (2) (2019)
Shailendra K. Gupta, Tanushree Jaitly, Ulf Schmitz, Gerold Schuler, Olaf Wolkenhauer, Julio Vera
Personalized cancer immunotherapy using Systems Medicine approaches. Briefings Bioinform. 17 (3) (2016)
Ulf Schmitz, Hojjat Naderi-Meshkin, Shailendra K. Gupta, Olaf Wolkenhauer, Julio Vera
The RNA world in the 21st century - a systems approach to finding non-coding keys to clinical questions. Briefings Bioinform. 17 (3) (2016)
Sushmita Paul, Julio Vera
Supervised Cluster Analysis of miRNA Expression Data Using Rough Hypercuboid Partition Matrix. PReMI (2015)
Svetoslav G. Nikolov, Julio Vera, Ulf Schmitz, Olaf Wolkenhauer
regulation in cancer signalling networks. Theory Biosci. 130 (1) (2011)
Julio Vera, Carlos González-Alcón, Alberto Marín-Sanguino, Néstor V. Torres
Optimization of biochemical systems through mathematical programming: Methods and applications. Comput. Oper. Res. 37 (8) (2010)
Svetoslav G. Nikolov, Xin Lai, Ulf W. Liebal, Olaf Wolkenhauer, Julio Vera
Integration of sensitivity and bifurcation analysis to detect critical processes in a model combining signalling and cell population dynamics. Int. J. Syst. Sci. 41 (1) (2010)
Peter Raasch, Ulf Schmitz, Nadja Patenge, Julio Vera, Bernd Kreikemeyer, Olaf Wolkenhauer
Non-coding RNA detection methods combined to improve usability, reproducibility and precision. BMC Bioinform. 11 (2010)
Julio Vera, Taesoo Kwon, Ulf Schmitz, Walter Kolch, Olaf Wolkenhauer
Exploration of homodimer receptor: homodimer protein interactions. Int. J. Bioinform. Res. Appl. 5 (4) (2009)
Xin Lai, Svetoslav G. Nikolov, Olaf Wolkenhauer, Julio Vera
A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis. Comput. Biol. Chem. 33 (4) (2009)
Julio Vera, Thomas Millat, Walter Kolch, Olaf Wolkenhauer
Dynamics of receptor and protein transducer homodimerisation. BMC Syst. Biol. 2 (2008)
Julio Vera, Julie Bachmann, Andrea C. Pfeifer, Verena Becker, Jose A. Hormiga, Néstor Torres Darias, Jens Timmer, Ursula Klingmüller, Olaf Wolkenhauer
A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway. BMC Syst. Biol. 2 (2008)
Hannes Link, Julio Vera, Dirk Weuster-Botz, Néstor Torres Darias, Ezequiel Franco-Lara
Multi-objective steady state optimization of biochemical reaction networks using a constrained genetic algorithm. Comput. Chem. Eng. 32 (8) (2008)
Svetoslav G. Nikolov, Julio Vera, Vladimir Kotev, Olaf Wolkenhauer, Valko Petrov
Dynamic properties of a delayed protein cross talk model. Biosyst. 91 (1) (2008)
Julio Vera, Cheng Sun, Yvonne Oertel, Olaf Wolkenhauer
SBToolbox. Bioinform. 23 (19) (2007)
Julio Vera, Raul Curto, Marta Cascante, Néstor V. Torres
Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy. Bioinform. 23 (17) (2007)
Henning Schmidt, Gunnar Drews, Julio Vera, Olaf Wolkenhauer
SBML export interface for the systems biology toolbox for MATLAB. Bioinform. 23 (10) (2007)
Julio Vera, Néstor V. Torres
MetMAP: An integrated Matlab TM package for analysis and optimization of metabolic systems. Silico Biol. 4 (2) (2003)