Derek Groen

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 48

Top Topics

Parallel Algorithm

Simulation Models

Top Venues

J. Comput. Sci.

Publications

Maziar Ghorbani, Diana Suleimenova, Alireza Jahani, Arindam Saha, Yani Xue, Kate Mintram, Anastasia Anagnostou, Auke Tas, William Low, Simon J. E. Taylor, Derek Groen
Flee 3: Flexible agent-based simulation for forced migration. J. Comput. Sci. 81 (2024)
Derek Groen, Nikela Papadopoulou, Petros Anastasiadis, Marcin Lawenda, Lukasz Szustak, Sergiy Gogolenko, Hamid Arabnejad, Alireza Jahani
Large-Scale Parallelization of Human Migration Simulation. IEEE Trans. Comput. Soc. Syst. 11 (2) (2024)
Derek Groen, Shivank Khullar, Moqi Groen-Xu, Rumyana Neykova
A Working Week Simulation Approach to Forecast Personal Well-Being. ICCS (3) (2024)
Laura M. Harbach, Derek Groen, Alireza Jahani, Diana Suleimenova, Maziar Ghorbani, Yani Xue
A Conceptual Approach to Agent-Based Modelling of Coping Mechanisms in Climate-Driven Flooding in Bangladesh. ICCS (5) (2024)
Arindam Saha, Maziar Ghorbani, Diana Suleimenova, Anastasia Anagnostou, Derek Groen
Impact of geography on the importance of parameters in infectious disease models. CoRR (2023)
Derek Groen, Diana Suleimenova, Alireza Jahani, Yani Xue
Facilitating simulation development for global challenge response and anticipation in a timely way. J. Comput. Sci. 72 (2023)
Bernhard C. Geiger, Alireza Jahani, Hussain Hussain, Derek Groen
Markov Aggregation for Speeding Up Agent-Based Movement Simulations. AAMAS (2023)
Derek Groen, Hamid Arabnejad, Diana Suleimenova, Wouter Edeling, Erwan Raffin, Yani Xue, Kevin Bronik, Nicolas Monnier, Peter V. Coveney
FabSim3: An automation toolkit for verified simulations using high performance computing. Comput. Phys. Commun. 283 (2023)
Alireza Jahani, Shenene Jess, Derek Groen, Diana Suleimenova, Yani Xue
Developing an Agent-Based Simulation Model to Forecast Flood-Induced Evacuation and Internally Displaced Persons. ICCS (4) (2023)
Sergey V. Kovalchuk, Clélia de Mulatier, Derek Groen, Maciej Paszynski, Valeria V. Krzhizhanovskaya, Jack J. Dongarra, Peter M. A. Sloot
The computational planet. J. Comput. Sci. 72 (2023)
Lucas Heighington, Derek Groen
Towards a Simplified Solution of COVID Spread in Buildings for Use in Coupled Models. ICCS (4) (2023)
Juraj Kardos, Wouter Edeling, Diana Suleimenova, Derek Groen, Olaf Schenk
Sensitivity Analysis of High-Dimensional Models with Correlated Inputs. CoRR (2023)
Diana Suleimenova, William Low, Derek Groen
An Agent-Based Forced Displacement Simulation: A Case Study of the Tigray Crisis. ICCS (4) (2022)
Imran Mahmood, Hamid Arabnejad, Diana Suleimenova, Isabel Sassoon, Alaa Marshan, Alan Edwin Serrano-Rico, Panos Louvieris, Anastasia Anagnostou, Simon J. E. Taylor, David Bell, Derek Groen
FACS: A geospatial agent-based simulator for analysing COVID-19 spread and public health measures on local regions. J. Simulation 16 (4) (2022)
Anastasia Anagnostou, Derek Groen, Simon J. E. Taylor, Diana Suleimenova, Nura Tijjani Abubakar, Arindam Saha, Kate Mintram, Maziar Ghorbani, Habiba Daroge, Tasin Islam, Yani Xue, Edward Okine, Nana Anokye
FACS-CHARM: A Hybrid Agent-Based and Discrete-Event Simulation Approach for Covid-19 Management at Regional Level. WSC (2022)
Yani Xue, Miqing Li, Hamid Arabnejad, Diana Suleimenova, Alireza Jahani, Bernhard C. Geiger, Zidong Wang, Xiaohui Liu, Derek Groen
Camp Location Selection in Humanitarian Logistics: A Multiobjective Simulation Optimization Approach. ICCS (3) (2022)
Wouter Edeling, Hamid Arabnejad, Robert Sinclair, Diana Suleimenova, Krishnakumar Gopalakrishnan, Bartosz Bosak, Derek Groen, Imran Mahmood, Daan Crommelin, Peter V. Coveney
The impact of uncertainty on predictions of the CovidSim epidemiological code. Nat. Comput. Sci. 1 (2) (2021)
Alireza Jahani, Hamid Arabnejad, Diana Suleimenova, Milana Vuckovic, Imran Mahmood, Derek Groen
Towards a Coupled Migration and Weather Simulation: South Sudan Conflict. ICCS (5) (2021)
Diana Suleimenova, Hamid Arabnejad, Wouter Edeling, David Coster, Onnie O. Luk, Jalal Lakhlili, Vytautas Jancauskas, Michal Kulczewski, Lourens E. Veen, Dongwei Ye, Pavel Zun, Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra, Daan Crommelin, Peter V. Coveney, Derek Groen
Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. J. Comput. Sci. 53 (2021)
Petros Anastasiadis, Sergiy Gogolenko, Nikela Papadopoulou, Marcin Lawenda, Hamid Arabnejad, Alireza Jahani, Imran Mahmood, Derek Groen
P-Flee: An Efficient Parallel Algorithm for Simulating Human Migration. IPDPS Workshops (2021)
Imran Mahmood, Mishal Jahan, Derek Groen, Aneela Javed, Faisal Shafait
An Agent-Based Simulation of the Spread of Dengue Fever. ICCS (3) (2020)
Sergiy Gogolenko, Derek Groen, Diana Suleimenova, Imran Mahmood, Marcin Lawenda, Francisco Javier Nieto de Santos, John Hanley, Milana Vuckovic, Mark Kröll, Bernhard C. Geiger, Robert Elsässer, Dennis Hoppe
Towards Accurate Simulation of Global Challenges on Data Centers Infrastructures via Coupling of Models and Data Sources. ICCS (6) (2020)
Derek Groen, Hamid Arabnejad, Vytautas Jancauskas, Wouter Edeling, Fredrik Jansson, Robin A. Richardson, Jalal Lakhlili, Linda van Veen, Bartosz Bosak, Piotr Kopta, D. W. Wright, N. Monnier, Paul Karlshoefer, Diana Suleimenova, Robert Sinclair, Maxime Vassaux, Anna Nikishova, Mariusz Bieniek, Onnie O. Luk, Michal Kulczewski, Erwan Raffin, Daan Crommelin, Olivier Hoenen, David P. Coster, Tomasz Piontek, Peter V. Coveney
VECMAtk: A Scalable Verification, Validation and Uncertainty Quantification Toolkit for Scientific Simulations. CoRR (2020)
Diana Suleimenova, Derek Groen
How Policy Decisions Affect Refugee Journeys in South Sudan: A Study Using Automated Ensemble Simulations. J. Artif. Soc. Soc. Simul. 23 (1) (2020)
Massimiliano Zanin, Ivan Chorbev, Blaz Stres, Egils Stalidzans, Julio Vera, Paolo Tieri, Filippo Castiglione, Derek Groen, Huiru Zheng, Jan Baumbach, Johannes A. Schmid, José Basilio, Peter Klimek, Natasa Debeljak, Damjana Rozman, Harald H. H. W. Schmidt
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine. Briefings Bioinform. 20 (3) (2019)
David Bell, Derek Groen, Navonil Mustafee, Jonathan Ozik, Steffen Straßburger
Hybrid Simulation Development - Is It Just Analytics? WSC (2019)
Anastasia Anagnostou, Simon J. E. Taylor, Derek Groen, Diana Suleimenova, Nana Anokye, Riccardo Bruno, Roberto Barbera
Building Global Research Capacity in Public Health: The Case of a Science Gateway for Physical Activity Lifelong Modelling and Simulation. WSC (2019)
Derek Groen, Robin A. Richardson, David W. Wright, Vytautas Jancauskas, Robert Sinclair, Paul Karlshoefer, Maxime Vassaux, Hamid Arabnejad, Tomasz Piontek, Piotr Kopta, Bartosz Bosak, Jalal Lakhlili, Olivier Hoenen, Diana Suleimenova, Wouter Edeling, Daan Crommelin, Anna Nikishova, Peter V. Coveney
Introducing VECMAtk - Verification, Validation and Uncertainty Quantification for Multiscale and HPC Simulations. ICCS (4) (2019)
Christian Vanhille Campos, Diana Suleimenova, Derek Groen
A Coupled Food Security and Refugee Movement Model for the South Sudan Conflict. ICCS (5) (2019)
Saad Alowayyed, Tomasz Piontek, James L. Suter, Olivier Hoenen, Derek Groen, Onnie Luk, Bartosz Bosak, Piotr Kopta, Krzysztof Kurowski, Oliver Perks, Keeran Brabazon, Vytautas Jancauskas, David Coster, Peter V. Coveney, Alfons G. Hoekstra
Patterns for High Performance Multiscale Computing. Future Gener. Comput. Syst. 91 (2019)
Derek Groen, David Bell, Hamid Arabnejad, Diana Suleimenova, Simon J. E. Taylor, Anastasia Anagnostou
Towards Modelling the Effect of Evolving Violence on Forced Migration. WSC (2019)
Derek Groen
Development of a Multiscale Simulation Approach for Forced Migration. ICCS (2) (2018)
Luis Eduardo Pérez Estrada, Derek Groen, Jose Emmanuel Ramirez-Marquez
A Serious Video Game To Support Decision Making On Refugee Aid Deployment Policy. ICCS (2017)
Derek Groen, Bartosz Bosak, Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra, Petros Koumoutsakos
Multiscale Modelling and Simulation, 14th International Workshop. ICCS (2017)
Saad Alowayyed, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Multiscale computing in the exascale era. J. Comput. Sci. 22 (2017)
Diana Suleimenova, David Bell, Derek Groen
Towards an automated framework for agent-based simulation of refugee movements. WSC (2017)
Saad Alowayyed, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Multiscale Computing in the Exascale Era. CoRR (2016)
Derek Groen
Simulating Refugee Movements: Where Would You Go? ICCS (2016)
Derek Groen, Valeria V. Krzhizhanovskaya, Bartosz Bosak, Timothy D. Scheibe, Alfons G. Hoekstra
Multiscale Modelling and Simulation, 13th International Workshop. ICCS (2016)
Derek Groen, Agastya Bhati, James J. Suter, James Hetherington, Stefan J. Zasada, Peter V. Coveney
FabSim: Facilitating computational research through automation on large-scale and distributed e-infrastructures. Comput. Phys. Commun. 207 (2016)
Derek Groen, Simon Portegies Zwart
From Thread to Transcontinental Computer: Disturbing Lessons in Distributed Supercomputing. CoRR (2015)
Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11 (4) (2015)
Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen
An automated multiscale ensemble simulation approach for vascular blood flow. CoRR (2015)
Valeria V. Krzhizhanovskaya, Derek Groen, B. Bozak, Alfons G. Hoekstra
Multiscale Modelling and Simulation Workshop: 12 Years of Inspiration. ICCS (2015)
Derek Groen, Xiaohu Guo, James A. Grogan, Ulf D. Schiller, James M. Osborne
Software development practices in academia: a case study comparison. CoRR (2015)
Derek Groen, Agastya Bhati, James J. Suter, James Hetherington, Stefan J. Zasada, Peter V. Coveney
FabSim: facilitating computational research through automation on large-scale and distributed e-infrastructures. CoRR (2015)
Mohamed A. Itani, Ulf D. Schiller, Sebastian Schmieschek, James Hetherington, Miguel O. Bernabeu, Hoskote Chandrashekar, Fergus Robertson, Peter V. Coveney, Derek Groen
An automated multiscale ensemble simulation approach for vascular blood flow. J. Comput. Sci. 9 (2015)
Derek Groen, Simon Portegies Zwart
From Thread to Transcontinental Computer: Disturbing Lessons in Distributed Supercomputing. e-Science (2015)
Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney
Weighted decomposition in high-performance lattice-Boltzmann simulations: are some lattice sites more equal than others? CoRR (2014)
Derek Groen, Stefan J. Zasada, Peter V. Coveney
Survey of Multiscale and Multiphysics Applications and Communities. Comput. Sci. Eng. 16 (2) (2014)
Derek Groen, David Abou Chacra, Rupert W. Nash, Jirí Jaros, Miguel O. Bernabeu, Peter V. Coveney
Weighted Decomposition in High-Performance Lattice-Boltzmann Simulations: Are Some Lattice Sites More Equal than Others? EASC (2014)
James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10 (3) (2014)
Joris Borgdorff, Mariusz Mamonski, Bartosz Bosak, Krzysztof Kurowski, Mohamed Ben Belgacem, Bastien Chopard, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment. J. Comput. Sci. 5 (5) (2014)
Katarzyna Rycerz, Eryk Ciepiela, Grzegorz Dyk, Derek Groen, Tomasz Gubala, Daniel Harezlak, Maciej Pawlik, James J. Suter, Stefan J. Zasada, Peter V. Coveney, Marian Bubak
Support for Multiscale Simulations with Molecular Dynamics. ICCS (2013)
Derek Groen, Steven Rieder, Simon Portegies Zwart
MPWide: a light-weight library for efficient message passing over wide area networks. CoRR (2013)
Joris Borgdorff, Mariusz Mamonski, Bartosz Bosak, Derek Groen, Mohamed Ben Belgacem, Krzysztof Kurowski, Alfons G. Hoekstra
Multiscale Computing with the Multiscale Modeling Library and Runtime Environment. ICCS (2013)
Miguel O. Bernabeu, Claudio A. Franco, Martin Jones, Jens H. Nielsen, Timm Krüger, Rupert W. Nash, Derek Groen, James Hetherington, Holger Gerhardt, Peter V. Coveney
Computer simulations reveal complex distribution of haemodynamic forces in a mouse retina model of angiogenesis. CoRR (2013)
Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney
Analysing and modelling the performance of the HemeLB lattice-Boltzmann simulation environment. J. Comput. Sci. 4 (5) (2013)
Joris Borgdorff, Mariusz Mamonski, Bartosz Bosak, Krzysztof Kurowski, Mohamed Ben Belgacem, Bastien Chopard, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Distributed Multiscale Computing with MUSCLE 2, the Multiscale Coupling Library and Environment. CoRR (2013)
Derek Groen, James Hetherington, Hywel B. Carver, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney
Analyzing and Modeling the Performance of the HemeLB Lattice-Boltzmann Simulation Environment CoRR (2012)
Stefan J. Zasada, Mariusz Mamonski, Derek Groen, Joris Borgdorff, Ilya Saverchenko, Tomasz Piontek, Krzysztof Kurowski, Peter V. Coveney
Distributed Infrastructure for Multiscale Computing. DS-RT (2012)
Miguel O. Bernabeu, Rupert W. Nash, Derek Groen, Hywel B. Carver, James Hetherington, Timm Krüger, Peter V. Coveney
Choice of blood rheology model has minor impact on computational assessment of shear stress mediated vascular risk CoRR (2012)
Hywel B. Carver, Derek Groen, James Hetherington, Rupert W. Nash, Miguel O. Bernabeu, Peter V. Coveney
Coalesced communication: a design pattern for complex parallel scientific software CoRR (2012)
Derek Groen, Joris Borgdorff, Carles Bona-Casas, James Hetherington, Rupert W. Nash, Stefan J. Zasada, Ilya Saverchenko, Mariusz Mamonski, Krzysztof Kurowski, Miguel O. Bernabeu, Alfons G. Hoekstra, Peter V. Coveney
Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations CoRR (2012)
Derek Groen, Stefan J. Zasada, Peter V. Coveney
Survey of Multiscale and Multiphysics Applications and Communities CoRR (2012)
Derek Groen, Steven Rieder, Simon Portegies Zwart
High performance cosmological simulations on a grid of supercomputers CoRR (2011)
Derek Groen, Simon Portegies Zwart, Tomoaki Ishiyama, Junichiro Makino
High Performance Gravitational N-body Simulations on a Planet-wide Distributed Supercomputer CoRR (2011)
Stefan J. Zasada, Derek Groen, Peter V. Coveney
Developing an infrastructure to support multiscale modelling and simulation. TG (2011)
Derek Groen, Stefan J. Zasada, Peter V. Coveney
Taxonomy of Multiscale Computing Communities. e-Science Workshops (2011)
Derek Groen, James J. Suter, Peter V. Coveney
Modelling Distributed Multiscale Simulation Performance: An Application to Nanocomposites. e-Science Workshops (2011)
Simon Portegies Zwart, Derek Groen, Tomoaki Ishiyama, Keigo Nitadori, Junichiro Makino, Cees de Laat, Steve McMillan, Kei Hiraki, Stefan Harfst, Paola Grosso
Simulating the Universe on an Intercontinental Grid. Computer 43 (8) (2010)
Simon Portegies Zwart, Tomoaki Ishiyama, Derek Groen, Keigo Nitadori, Junichiro Makino, Cees de Laat, Stephen L. W. McMillan, Kei Hiraki, Stefan Harfst, Paola Grosso
Simulating the universe on an intercontinental grid of supercomputers CoRR (2010)
Derek Groen, Steven Rieder, Paola Grosso, Cees de Laat, Simon Portegies Zwart
A platform independent communication library for distributed computing. ICCS (1) (2010)
Derek Groen, Steven Rieder, Paola Grosso, Cees de Laat, Simon Portegies Zwart
A Light-Weight Communication Library for Distributed Computing CoRR (2010)
Derek Groen, Stefan Harfst, Simon Portegies Zwart
The Living Application: a Self-Organizing System for Complex Grid Tasks. Int. J. High Perform. Comput. Appl. 24 (2) (2010)
Derek Groen, Stefan Harfst, Simon Portegies Zwart
On the Origin of Grid Species: The Living Application. ICCS (1) (2009)
Derek Groen, Stefan Harfst, Simon Portegies Zwart
The Living Application: a Self-Organising System for Complex Grid Tasks CoRR (2009)
Pavel Bar, Camille Coti, Derek Groen, Thomas Hérault, Valentin Kravtsov, Assaf Schuster, Martin T. Swain
Running Parallel Applications with Topology-Aware Grid Middleware. eScience (2009)
Derek Groen, Simon Portegies Zwart, Steve McMillan, Jun Makino
Simulating N-Body Systems on the Grid Using Dedicated Hardware. ICCS (1) (2008)
Simon Portegies Zwart, Steve McMillan, Breanndán Ó Nualláin, Douglas Heggie, James Lombardi, Piet Hut, Sambaran Banerjee, Houria Belkus, Tassos Fragos, John Fregeau, Michiko Fuji, Evghenii Gaburov, Evert Glebbeek, Derek Groen, Stefan Harfst, Rob Izzard, Mario Juric, Stephen Justham, Peter Teuben, Joris van Bever, Ofer Yaron, Marcel Zemp
A Multiphysics and Multiscale Software Environment for Modeling Astrophysical Systems. ICCS (2) (2008)
Derek Groen, Simon Portegies Zwart, Steve McMillan, Jun Makino
Distributed N-body Simulation on the Grid Using Dedicated Hardware CoRR (2007)
Simon Portegies Zwart, Steve McMillan, Derek Groen, Alessia Gualandris, Michael Sipior, Willem Vermin
A parallel gravitational N-body kernel CoRR (2007)
Jorge A. T. Gomes, Mário David, J. Martins, Luís Bernardo, Ariel García, Markus Hardt, Harald Kornmayer, J. Marco, R. Marco, D. Rodríguez, Iván Díaz, D. Cano, José Salt, S. Gonzalez, Javier Sánchez, Farida Fassi, V. Lara, P. Nyczyk, Patryk Lason, Andrzej Ozieblo, Pawel Wolniewicz, Michal Bluj, Krzysztof Nawrocki, Adam Padee, Wojciech Wislicki, C. Fernández, J. Fontán, Yannis Cotronis, Evangelos Floros, George Tsouloupas, Wei Xing, Marios D. Dikaiakos, Ján Astalos, Brian A. Coghlan, Elisa Heymann, Miquel A. Senar, C. Kanellopoulos, A. Ramos, Derek Groen
Experience with the International Testbed in the CrossGrid Project. EGC (2005)
Alfredo Tirado-Ramos, Derek Groen, Peter M. A. Sloot
On-Line Application Performance Monitoring of Blood Flow Simulation in Computational Grid Architectures. CBMS (2005)