Alfons G. Hoekstra

Publication Activity (10 Years)

Years Active: 1994-2024
Publications (10 Years): 35

Top Topics

Phase Transition

Interaction Model

Simulation Software

Top Venues

J. Comput. Sci.

Publications

Alfons G. Hoekstra, Henk A. Marquering
Towards a Generation of Digital Twins in Healthcare of Ischaemic and Haemorrhagic Stroke. ICCS (3) (2024)
Yue Hao, Claudia Tersteeg, Alfons G. Hoekstra, Gábor Závodszky
The effect of flow-derived mechanical cues on the growth and morphology of platelet aggregates under low, medium, and high shear rates. Comput. Biol. Medicine 180 (2024)
Dongwei Ye, Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra
Data-driven reduced-order modelling for blood flow simulations with geometry-informed snapshots. J. Comput. Phys. 497 (2024)
Yue Hao, Alfons G. Hoekstra, Gábor Závodszky
A Three-Dimensional Fluid-Structure Interaction Model for Platelet Aggregates Based on Porosity-Dependent Neo-Hookean Material. ICCS (7) (2024)
Dongwei Ye, Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra
Data-driven reduced-order modelling for blood flow simulations with geometry-informed snapshots. CoRR (2023)
Jeroen F. Uleman, René J. F. Melis, Alfons G. Hoekstra, Marcel G. M. Olde Rikkert, Rick Quax
Exploring the potential impact of multi-factor precision interventions in Alzheimer's disease with system dynamics. J. Biomed. Informatics 145 (2023)
Yue Hao, Gábor Závodszky, Claudia Tersteeg, Mojtaba Barzegari, Alfons G. Hoekstra
Image-based flow simulation of platelet aggregates under different shear rates. PLoS Comput. Biol. 19 (7) (2023)
Jelle van Dijk, Gábor Závodszky, Ana Lucia Varbanescu, Andy D. Pimentel, Alfons G. Hoekstra
Building a Fine-Grained Analytical Performance Model for Complex Scientific Simulations. PPAM (1) (2022)
Claire Miller, Max van der Kolk, Raymond M. Padmos, Tamás I. Józsa, Alfons G. Hoekstra
Uncertainty Quantification of Coupled 1D Arterial Blood Flow and 3D Tissue Perfusion Models Using the INSIST Framework. ICCS (6) (2021)
Dongwei Ye, Pavel Zun, Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra
Uncertainty quantification of a 3D In-Stent Restenosis model with surrogate modelling. CoRR (2021)
Raymond M. Padmos, Tamás I. Józsa, Wahbi K. El-Bouri, Gábor Závodszky, Stephen J. Payne, Alfons G. Hoekstra
Two-Way Coupling Between 1D Blood Flow and 3D Tissue Perfusion Models. ICCS (3) (2021)
Dongwei Ye, Anna Nikishova, Lourens E. Veen, Pavel Zun, Alfons G. Hoekstra
Non-intrusive and semi-intrusive uncertainty quantification of a multiscale in-stent restenosis model. Reliab. Eng. Syst. Saf. 214 (2021)
Diana Suleimenova, Hamid Arabnejad, Wouter Edeling, David Coster, Onnie O. Luk, Jalal Lakhlili, Vytautas Jancauskas, Michal Kulczewski, Lourens E. Veen, Dongwei Ye, Pavel Zun, Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra, Daan Crommelin, Peter V. Coveney, Derek Groen
Tutorial applications for Verification, Validation and Uncertainty Quantification using VECMA toolkit. J. Comput. Sci. 53 (2021)
Max van der Kolk, Claire Miller, Raymond M. Padmos, Victor Azizi, Alfons G. Hoekstra
des-ist: A Simulation Framework to Streamline Event-Based In Silico Trials. ICCS (3) (2021)
Claire Miller, Raymond M. Padmos, Max van der Kolk, Tamás I. Józsa, Noor Samuels, Yidan Xue, Stephen J. Payne, Alfons G. Hoekstra
In silico trials for treatment of acute ischemic stroke: Design and implementation. Comput. Biol. Medicine 137 (2021)
Benjamin Czaja, Gábor Závodszky, Alfons G. Hoekstra
A Heterogeneous Multi-scale Model for Blood Flow. ICCS (6) (2020)
Benjamin Czaja, Mario Gutierrez, Gábor Závodszky, David de Kanter, Alfons G. Hoekstra, Omolola Eniola-Adefeso
The influence of red blood cell deformability on hematocrit profiles and platelet margination. PLoS Comput. Biol. 16 (3) (2020)
Lourens E. Veen, Alfons G. Hoekstra
Easing Multiscale Model Design and Coupling with MUSCLE 3. ICCS (6) (2020)
Anna Nikishova, Giovanni E. Comi, Alfons G. Hoekstra
Sensitivity analysis based dimension reduction of multiscale models. Math. Comput. Simul. 170 (2020)
Anna Nikishova, Alfons G. Hoekstra
Semi-intrusive uncertainty propagation for multiscale models. J. Comput. Sci. 35 (2019)
Saad Alowayyed, Maxime Vassaux, Benjamin Czaja, Peter V. Coveney, Alfons G. Hoekstra
Towards Heterogeneous Multi-scale Computing on Large Scale Parallel Supercomputers. Supercomput. Front. Innov. 6 (4) (2019)
Victor Azizi Tarksalooyeh, Gábor Závodszky, Alfons G. Hoekstra
Optimizing Parallel Performance of the Cell Based Blood Flow Simulation Software HemoCell. ICCS (3) (2019)
Saad Alowayyed, Tomasz Piontek, James L. Suter, Olivier Hoenen, Derek Groen, Onnie Luk, Bartosz Bosak, Piotr Kopta, Krzysztof Kurowski, Oliver Perks, Keeran Brabazon, Vytautas Jancauskas, David Coster, Peter V. Coveney, Alfons G. Hoekstra
Patterns for High Performance Multiscale Computing. Future Gener. Comput. Syst. 91 (2019)
Alfons G. Hoekstra, Frans N. van de Vosse, Oliver Röhrle
The Virtual Physiological Human Conference 2016. J. Comput. Sci. 24 (2018)
Saad Alowayyed, Gábor Závodszky, Victor Azizi, Alfons G. Hoekstra
Load balancing of parallel cell-based blood flow simulations. J. Comput. Sci. 24 (2018)
Rick Quax, Gregor Chliamovitch, Alexandre Dupuis, Jean-Luc Falcone, Bastien Chopard, Alfons G. Hoekstra, Peter M. A. Sloot
Information Processing Features Can Detect Behavioral Regimes of Dynamical Systems. Complex. 2018 (2018)
Gábor Závodszky, Alfons G. Hoekstra
How will Your Digital Twin be Born? ERCIM News 2018 (115) (2018)
Anna Nikishova, Anna V. Kaluzhnaya, Alexander Boukhanovsky, Alfons G. Hoekstra
Uncertainty quantification and sensitivity analysis applied to the wind wave model SWAN. Environ. Model. Softw. 95 (2017)
Derek Groen, Bartosz Bosak, Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra, Petros Koumoutsakos
Multiscale Modelling and Simulation, 14th International Workshop. ICCS (2017)
Gábor Závodszky, Britt van Rooij, Victor Azizi, Saad Alowayyed, Alfons G. Hoekstra
Hemocell: a high-performance microscopic cellular library. ICCS (2017)
Saad Alowayyed, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Multiscale computing in the exascale era. J. Comput. Sci. 22 (2017)
Rick Quax, Gregor Chliamovitch, Alexandre Dupuis, Jean-Luc Falcone, Bastien Chopard, Alfons G. Hoekstra, Peter M. A. Sloot
Information processing features can detect behavioral regimes of dynamical systems. CoRR (2017)
Saad Alowayyed, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Multiscale Computing in the Exascale Era. CoRR (2016)
Derek Groen, Valeria V. Krzhizhanovskaya, Bartosz Bosak, Timothy D. Scheibe, Alfons G. Hoekstra
Multiscale Modelling and Simulation, 13th International Workshop. ICCS (2016)
Andrew I. Svitenkov, Pavel Zun, Oleg Rekin, Alfons G. Hoekstra
Partitioning of Arterial Tree for Parallel Decomposition of Hemodynamic Calculations. ICCS (2016)
Valeria V. Krzhizhanovskaya, Derek Groen, B. Bozak, Alfons G. Hoekstra
Multiscale Modelling and Simulation Workshop: 12 Years of Inspiration. ICCS (2015)
Omri Har-Shemesh, Rick Quax, Alfons G. Hoekstra, Peter M. A. Sloot
Information geometric analysis of phase transitions in complex patterns: the case of the Gray-Scott reaction-diffusion model. CoRR (2015)
Lampros Mountrakis, Eric Lorenz, Orestis Malaspinas, Saad Alowayyed, Bastien Chopard, Alfons G. Hoekstra
Parallel performance of an IB-LBM suspension simulation framework. J. Comput. Sci. 9 (2015)
Andrew I. Svitenkov, Sergey A. Chivilikhin, Alfons G. Hoekstra, Alexander Boukhanovsky
Fluid Simulations with Atomistic Resolution: Multiscale Model with Account of Nonlocal Momentum Transfer. ICCS (2015)
Joris Borgdorff, Mariusz Mamonski, Bartosz Bosak, Krzysztof Kurowski, Mohamed Ben Belgacem, Bastien Chopard, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Distributed multiscale computing with MUSCLE 2, the Multiscale Coupling Library and Environment. J. Comput. Sci. 5 (5) (2014)
Joris Borgdorff, Jean-Luc Falcone, Eric Lorenz, Carles Bona-Casas, Bastien Chopard, Alfons G. Hoekstra
Foundations of distributed multiscale computing: Formalization, specification, and analysis. J. Parallel Distributed Comput. 73 (4) (2013)
Joris Borgdorff, Mariusz Mamonski, Bartosz Bosak, Derek Groen, Mohamed Ben Belgacem, Krzysztof Kurowski, Alfons G. Hoekstra
Multiscale Computing with the Multiscale Modeling Library and Runtime Environment. ICCS (2013)
Joris Borgdorff, Mariusz Mamonski, Bartosz Bosak, Krzysztof Kurowski, Mohamed Ben Belgacem, Bastien Chopard, Derek Groen, Peter V. Coveney, Alfons G. Hoekstra
Distributed Multiscale Computing with MUSCLE 2, the Multiscale Coupling Library and Environment. CoRR (2013)
Joris Borgdorff, Carles Bona-Casas, Mariusz Mamonski, Krzysztof Kurowski, Tomasz Piontek, Bartosz Bosak, Katarzyna Rycerz, Eryk Ciepiela, Tomasz Gubala, Daniel Harezlak, Marian Bubak, Eric Lorenz, Alfons G. Hoekstra
A Distributed Multiscale Computation of a Tightly Coupled Model Using the Multiscale Modeling Language. ICCS (2012)
Derek Groen, Joris Borgdorff, Carles Bona-Casas, James Hetherington, Rupert W. Nash, Stefan J. Zasada, Ilya Saverchenko, Mariusz Mamonski, Krzysztof Kurowski, Miguel O. Bernabeu, Alfons G. Hoekstra, Peter V. Coveney
Flexible composition and execution of high performance, high fidelity multiscale biomedical simulations CoRR (2012)
Eric Lorenz, Alfons G. Hoekstra
Heterogeneous Multiscale Simulations of Suspension Flow. Multiscale Model. Simul. 9 (4) (2011)
Bastien Chopard, Jean-Luc Falcone, Alfons G. Hoekstra, Joris Borgdorff
A Framework for Multiscale and Multiscience Modeling and Numerical Simulations. UC (2011)
Jörg Bernsdorf, Guntram Berti, Bastien Chopard, Jan Hegewald, Manfred Krafczyk, Dinan Wang, Eric Lorenz, Alfons G. Hoekstra
Towards Distributed Multiscale Simulation of Biological Processes. e-Science Workshops (2011)
Joris Borgdorff, Eric Lorenz, Alfons G. Hoekstra, Jean-Luc Falcone, Bastien Chopard
A Principled Approach to Distributed Multiscale Computing, from Formalization to Execution. e-Science Workshops (2011)
S. Murtaza, Alfons G. Hoekstra, Peter M. A. Sloot
Cellular Automata Simulations on a FPGA cluster. Int. J. High Perform. Comput. Appl. 25 (2) (2011)
Alfonso Caiazzo, David Evans, Jean-Luc Falcone, Jan Hegewald, Eric Lorenz, Bernd Stahl, Dinan Wang, Jörg Bernsdorf, Bastien Chopard, Julian Gunn, D. Rodney Hose, Manfred Krafczyk, Patricia V. Lawford, Rod Smallwood, Dawn Walker, Alfons G. Hoekstra
A Complex Automata approach for in-stent restenosis: Two-dimensional multiscale modelling and simulations. J. Comput. Sci. 2 (1) (2011)
Jean-Luc Falcone, Bastien Chopard, Alfons G. Hoekstra
MML: towards a Multiscale Modeling Language. ICCS (1) (2010)
Peter M. A. Sloot, Alfons G. Hoekstra
Multi-scale modelling in computational biomedicine. Briefings Bioinform. 11 (1) (2010)
Alfons G. Hoekstra, Li-Shi Luo, Manfred Krafczyk
Mesoscopic methods in engineering and science. Comput. Math. Appl. 59 (7) (2010)
Lev Naumov, Alfons G. Hoekstra, Peter M. A. Sloot
The influence of mitoses rate on growth dynamics of a cellular automata model of tumour growth. ICCS (1) (2010)
S. Murtaza, Alfons G. Hoekstra, Peter M. A. Sloot
Compute Bound and I/O Bound Cellular Automata Simulations on FPGA Logic. ACM Trans. Reconfigurable Technol. Syst. 1 (4) (2009)
Alfonso Caiazzo, David Evans, Jean-Luc Falcone, Jan Hegewald, Eric Lorenz, Bernd Stahl, Dinan Wang, Jörg Bernsdorf, Bastien Chopard, Julian Gunn, D. Rodney Hose, Manfred Krafczyk, Patricia V. Lawford, Rod Smallwood, Dawn Walker, Alfons G. Hoekstra
Towards a Complex Automata Multiscale Model of In-Stent Restenosis. ICCS (1) (2009)
Valeria V. Krzhizhanovskaya, Alfons G. Hoekstra
Simulation of Multiphysics Multiscale Systems, 5th International Workshop. ICCS (2) (2008)
Lilit Axner, Jörg Bernsdorf, Thomas Zeiser, Peter Lammers, Jan Linxweiler, Alfons G. Hoekstra
Performance evaluation of a parallel sparse lattice Boltzmann solver. J. Comput. Phys. 227 (10) (2008)
Jan Hegewald, Manfred Krafczyk, Jonas Tölke, Alfons G. Hoekstra, Bastien Chopard
An Agent-Based Coupling Platform for Complex Automata. ICCS (2) (2008)
Bastien Chopard, Jean-Luc Falcone, Ranaivo Mahaleo Razakanirina, Alfons G. Hoekstra, Alfonso Caiazzo
On the Collision-Propagation and Gather-Update Formulations of a Cellular Automata Rule. ACRI (2008)
Alfonso Caiazzo, Jean-Luc Falcone, Bastien Chopard, Alfons G. Hoekstra
Scale-Splitting Error in Complex Automata Models for Reaction-Diffusion Systems. ICCS (2) (2008)
S. Murtaza, Alfons G. Hoekstra, Peter M. A. Sloot
Floating point based Cellular Automata simulations using a dual FPGA-enabled system. HPRCTA@SC (2008)
Alfons G. Hoekstra, Jean-Luc Falcone, Alfonso Caiazzo, Bastien Chopard
Multi-scale Modeling with Cellular Automata: The Complex Automata Approach. ACRI (2008)
Alfonso Caiazzo, Jean-Luc Falcone, Bastien Chopard, Alfons G. Hoekstra
Error Investigations in Complex Automata Models for Reaction-Diffusion Systems. ACRI (2008)
Alfons G. Hoekstra, Simon Portegies Zwart, Marian Bubak, Peter M. A. Sloot
Towards Distributed Petascale Computing CoRR (2007)
Alfons G. Hoekstra, Eric Lorenz, Jean-Luc Falcone, Bastien Chopard
Towards a Complex Automata Framework for Multi-scale Modeling: Formalism and the Scale Separation Map. International Conference on Computational Science (1) (2007)
S. Murtaza, Alfons G. Hoekstra, Peter M. A. Sloot
Performance Modeling of 2D Cellular Automata on FPGA. FPL (2007)
Roeland Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, Peter M. A. Sloot, Paulien Hogeweg
Problem-Solving Environments for Biological Morphogenesis. Comput. Sci. Eng. 8 (1) (2006)
Alfons G. Hoekstra, Peter M. A. Sloot
Introducing Grid Speedup G: A Scalability Metric for Parallel Applications on the Grid. EGC (2005)
Lilit Abrahamyan, Jorrit A. Schaap, Alfons G. Hoekstra, Denis P. Shamonin, Frieke M. A. Box, Rob J. van der Geest, Johan H. C. Reiber, Peter M. A. Sloot
A Problem Solving Environment for Image-Based Computational Hemodynamics. International Conference on Computational Science (1) (2005)
Alfons G. Hoekstra, Jos van't Hoff, Abdel Monim Artoli, Peter M. A. Sloot
Unsteady flow in a 2D elastic tube with the LBGK method. Future Gener. Comput. Syst. 20 (6) (2004)
Abdel Monim Artoli, Lilit Abrahamyan, Alfons G. Hoekstra
Accuracy versus Performance in Lattice Boltzmann BGK Simulations of Systolic Flows. International Conference on Computational Science (2004)
Bastien Chopard, Alfons G. Hoekstra
Computational science of lattice Boltzmann modelling. Future Gener. Comput. Syst. 20 (6) (2004)
Peter M. A. Sloot, Alfredo Tirado-Ramos, Alfons G. Hoekstra, Marian Bubak
An interactive Grid for non-invasive vascular reconstruction. CCGRID (2004)
Alfredo Tirado-Ramos, Peter M. A. Sloot, Alfons G. Hoekstra, Marian Bubak
An integrative approach to high-performance biomedical problem solving environments on the Grid. Parallel Comput. 30 (9-10) (2004)
Abdel Monim Artoli, Drona Kandhai, Huub C. J. Hoefsloot, Alfons G. Hoekstra, Peter M. A. Sloot
Lattice BGK simulations of flow in a symmetric bifurcation. Future Gener. Comput. Syst. 20 (6) (2004)
Alfons G. Hoekstra, Jos van't Hoff, Abdel Monim Artoli, Peter M. A. Sloot
Lattice BGK Simulations of Unsteady Flow in a 2D Elastic Tube. International Conference on Computational Science (2003)
Abdel Monim Artoli, Drona Kandhai, Huub C. J. Hoefsloot, Alfons G. Hoekstra, Peter M. A. Sloot
Lattice Boltzmann, a Robust and Accurate Solver for Interactive Computational Hemodynamics. International Conference on Computational Science (2003)
Roeland Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, Peter M. A. Sloot
A Problem Solving Environment for Modelling Stony Coral Morphogenesis. International Conference on Computational Science (2003)
Abdel Monim Artoli, Alfons G. Hoekstra, Peter M. A. Sloot
Accuracy of 2D Pulsatile Flow in the Lattice Boltzmann BGK Method. International Conference on Computational Science (1) (2002)
Roeland Merks, Alfons G. Hoekstra, Jaap A. Kaandorp, Peter M. A. Sloot
Spontaneous Branching in a Polyp Oriented Model of Stony Coral Growth. International Conference on Computational Science (1) (2002)
Peter M. A. Sloot, Alfons G. Hoekstra
Cellular Automata as a Mesoscopic Approach to Model and Simulate Complex Systems. International Conference on Computational Science (1) (2001)
Drona Kandhai, Antti Koponen, Alfons G. Hoekstra, Peter M. A. Sloot
Iterative momentum relaxation for fast lattice-Boltzmann simulations. Future Gener. Comput. Syst. 18 (1) (2001)
Henri E. Bal, Raoul Bhoedjang, Rutger F. H. Hofman, Ceriel J. H. Jacobs, Thilo Kielmann, Jason Maassen, Rob van Nieuwpoort, John Romain, Luc Renambot, Tim Rühl, Ronald Veldema, Kees Verstoep, Aline Baggio, Gerco Ballintijn, Ihor Kuz, Guillaume Pierre, Maarten van Steen, Andrew S. Tanenbaum, Gerben Doornbos, Desmond Germans, Hans J. W. Spoelder, Evert Jan Baerends, Stan J. A. van Gisbergen, Hamid Afsermanseh, G. Dick van Albada, Adam Belloum, David Dubbeldam, Zeger W. Hendrikse, Louis O. Hertzberger, Alfons G. Hoekstra, Kamil Iskra, Drona Kandhai, Dennis C. Koelma, Frank van der Linden, Benno J. Overeinder, Peter M. A. Sloot, Piero Spinnato, Dick H. J. Epema, Arjan J. C. van Gemund, Pieter P. Jonker, Andrei Radulescu, Kees van Reeuwijk, Henk J. Sips, Peter M. W. Knijnenburg, Michael S. Lew, Floris Sluiter, Lex Wolters, Hans Blom, Cees de Laat
The Distributed ASCI Supercomputer Project. ACM SIGOPS Oper. Syst. Rev. 34 (4) (2000)
Drona Kandhai, Antti Koponen, Alfons G. Hoekstra, Peter M. A. Sloot
Iterative Momentum Relaxation for Fast Lattice-Boltzmann Simulations. HPCN Europe (1999)
David Dubbeldam, Alfons G. Hoekstra, Peter M. A. Sloot
Computational Aspects of Multi-Species Lattice-Gas Automata. HPCN Europe (1999)
Peter M. A. Sloot, Jaap A. Kaandorp, Alfons G. Hoekstra, Benno J. Overeinder
Distributed Simulation with Cellular Automata: Architecture and Applications. SOFSEM (1999)
M. A. Kartawidjaja, Alfons G. Hoekstra
Memory Efficiency of Parallel Programs and Memory Bounded Speedup. HPCN Europe (1998)
Drona Kandhai, David Dubbeldam, Alfons G. Hoekstra, Peter M. A. Sloot
Parallel Latice-Boltzmann Simulation of Fluid Flow in Centrifugal Elutriation Chambers. HPCN Europe (1998)
Alfons G. Hoekstra, Arndt Bode
High Performance Computing and Networking Europe 1997. Future Gener. Comput. Syst. 13 (4-5) (1998)
Alfons G. Hoekstra, Leo Dorst, Martin Bergman, Jose M. Lagerberg, Arnoud Visser, Hakan Yakali, Frans C. A. Groen, Louis O. Hertzberger
High Performance Discrete Event Simulations to Evaluate Complex Industrial Systems. HPCN Europe (1997)
Alfons G. Hoekstra, M. D. Grimminck, Peter M. A. Sloot
Simulating Light Scattering from Micron-Sized Particles: A Parallel Fast Discrete Dipole Approximation. HPCN Europe (1996)
Alfons G. Hoekstra, Peter M. A. Sloot, Frank van der Linden, M. van Muiswinkel, J. J. J. Vesseur, Louis O. Hertzberger
Native and generic parallel programming environments on a transputer and a PowerPC platform. Concurr. Pract. Exp. 8 (1) (1996)
Peter M. A. Sloot, Alfons G. Hoekstra, Louis O. Hertzberger
A Comparison of the Iserver-Occam, Parix, Express, and PVM Programming Environments on a Parsytec GCel. HPCN (1994)