Martin T. Swain

Publication Activity (10 Years)

Years Active: 2001-2019
Publications (10 Years): 5

Top Topics

High Throughput

Protein Interaction

Gene Regulation

Top Venues

Future Gener. Comput. Syst.

BIOSTEC (Selected Papers)

Publications

Arthur Morris, Justin Pachebat, Guy Robinson, Rachel Chalmers, Martin T. Swain
Identifying and Resolving Genome Misassembly Issues Important for Biomarker Discovery in the Protozoan Parasite, Cryptosporidium. BIOINFORMATICS (2019)
Arthur Morris, Justin Pachebat, Graeme Tyson, Guy Robinson, Rachel Chalmers, Martin T. Swain
Generating Reliable Genome Assemblies of Intestinal Protozoans from Clinical Samples for the Purpose of Biomarker Discovery. BIOSTEC (Selected Papers) (2019)
Alexandru E. Mizeranschi, Martin T. Swain, Raluca Scona, Quentin Fazilleau, Bartosz Bosak, Tomasz Piontek, Piotr Kopta, Paul Thompson, Werner Dubitzky
MultiGrain/MAPPER: A distributed multiscale computing approach to modeling and simulating gene regulation networks. Future Gener. Comput. Syst. 63 (2016)
Umar Khan Niazi, Kathrin K. Geyer, Martin J. Vickers, Karl F. Hoffmann, Martin T. Swain
DISMISS: detection of stranded methylation in MeDIP-Seq data. BMC Bioinform. 17 (2016)
Altan Kara, Martin J. Vickers, Martin T. Swain, David E. Whitworth, Narcis Fernandez-Fuentes
MetaPred2CS: a sequence-based meta-predictor for protein-protein interactions of prokaryotic two-component system proteins. Bioinform. 32 (21) (2016)
Altan Kara, Martin J. Vickers, Martin T. Swain, David E. Whitworth, Narcis Fernandez-Fuentes
Genome-wide prediction of prokaryotic two-component system networks using a sequence-based meta-predictor. BMC Bioinform. 16 (2015)
Martin T. Swain
Fast Comparison of Microbial Genomes Using the Chaos Games Representation for Metagenomic Applications. ICCS (2013)
Martin T. Swain, Johannes J. Mandel, Werner Dubitzky
Comparative study of three commonly used continuous deterministic methods for modeling gene regulation networks. BMC Bioinform. 11 (2010)
Valentin Kravtsov, Pavel Bar, David Carmeli, Assaf Schuster, Martin T. Swain
A scheduling framework for large-scale, parallel, and topology-aware applications. J. Parallel Distributed Comput. 70 (9) (2010)
Valentin Kravtsov, Pavel Bar, David Carmeli, Assaf Schuster, Martin T. Swain
A scheduling framework for large-scale, parallel, and topology-aware applications. IPDPS (2010)
Martin T. Swain, Cândida G. Silva, Nuno Loureiro-Ferreira, Vitaliy Ostropytskyy, João Brito, Olivier Riche, Frederic T. Stahl, Werner Dubitzky, Rui M. M. Brito
P-found: Grid-enabling distributed repositories of protein folding and unfolding simulations for data mining. Future Gener. Comput. Syst. 26 (3) (2010)
Oliver Schmidt, José López, Francisco Azuaje, Paul Thompson, Martin T. Swain, Werner Dubitzky
A standard-compliant global map of the bile acid/xenobiotic signaling network: Construction and automated query processing. BIOCOMP (2009)
Pavel Bar, Camille Coti, Derek Groen, Thomas Hérault, Valentin Kravtsov, Assaf Schuster, Martin T. Swain
Running Parallel Applications with Topology-Aware Grid Middleware. eScience (2009)
Krzysztof Kurowski, Walter de Back, Werner Dubitzky, László Gulyás, George Kampis, Mariusz Mamonski, Gabor Szemes, Martin T. Swain
Complex System Simulations with QosCosGrid. ICCS (1) (2009)
Martin T. Swain, Johannes J. Mandel, Werner Dubitzky
Comparing Grid Computing Solutions for Reverse-Engineering Gene Regulatory Networks. ICCS (1) (2008)
Martin T. Swain, Vitaliy Ostropytskyy, Cândida G. Silva, Frederic T. Stahl, Olivier Riche, Rui M. M. Brito, Werner Dubitzky
Grid Computing Solutions for Distributed Repositories of Protein Folding and Unfolding Simulations. ICCS (3) (2008)
Vlado Stankovski, Martin T. Swain, Valentin Kravtsov, Thomas Niessen, Dennis Wegener, Jörg Kindermann, Werner Dubitzky
Grid-enabling data mining applications with DataMiningGrid: An architectural perspective. Future Gener. Comput. Syst. 24 (4) (2008)
Valentin Kravtsov, Martin T. Swain, Uri Dubin, Werner Dubitzky, Assaf Schuster
A Fast and Efficient Algorithm for Topology-Aware Coallocation. ICCS (1) (2008)
Vlado Stankovski, Martin T. Swain, Valentin Kravtsov, Thomas Niessen, Dennis Wegener, M. Rohm, Jernej Trnkoczy, Michael May, Jürgen Franke, Assaf Schuster, Werner Dubitzky
Digging Deep into the Data Mine with DataMiningGrid. IEEE Internet Comput. 12 (6) (2008)
Cândida G. Silva, Vitaliy Ostropytskyy, Nuno Loureiro-Ferreira, Daniel P. Berrar, Martin T. Swain, Werner Dubitzky, Rui M. M. Brito
P-found: The Protein Folding and Unfolding Simulation Repository. CIBCB (2006)
Martin T. Swain, T. Hunniford, Johannes J. Mandel, Niall M. Palfreyman, Werner Dubitzky
Modeling gene-regulatory networks using evolutionary algorithms and distributed computing. CCGRID (2005)
Martin T. Swain, Anthony J. Brooks, Graham J. L. Kemp
Predicting Peptide Interactions With Model Class II Mhc Structures. Int. J. Artif. Intell. Tools 14 (4) (2005)
Martin T. Swain, Graham J. L. Kemp
Modelling Protein Side-chain Conformations using Constraint Logic Programming. Comput. Chem. 26 (1) (2002)
Martin T. Swain, Anthony J. Brooks, Graham J. L. Kemp
An Automated Approach to Modeling Class II MHC Alleles and Predicting Peptide Binding. BIBE (2001)
Martin T. Swain, Graham J. L. Kemp
A CLP Approach to the Protein Side-Chain Placement Problem. CP (2001)