Francisco Azuaje

Publication Activity (10 Years)

Years Active: 1999-2020
Publications (10 Years): 2

Top Topics

Biological Pathways

Protein Interaction Networks

Top Venues

Briefings Bioinform.

Int. J. Data Min. Bioinform.

Publications

Poorya Parvizi, Francisco Azuaje, Evropi Theodoratou, Saturnino Luz
A Network-Based Embedding Method for Drug-Target Interaction Prediction. EMBC (2020)
Francisco Azuaje
Computational models for predicting drug responses in cancer research. Briefings Bioinform. 18 (5) (2017)
Haiying Wang, Francisco Azuaje, Huiru Zheng
An information theoretic approach to assessing gene-ontology-driven similarity and its application. Int. J. Data Min. Bioinform. 9 (2) (2014)
Huiru Zheng, Haiying Wang, Hua Xu, Zhongming Zhao, Francisco Azuaje
Correlating adverse drug reactions with biological pathways in humans. BIBM (2013)
Haiying Wang, Huiru Zheng, Francisco Azuaje
Detection of protein complexes in protein interaction networks is improved through network-driven functional homogeneity analysis. BIBM (2013)
Lu Zhang, Shengchang Gu, Yuan Liu, Bingqiang Wang, Francisco Azuaje
Gene set analysis in the cloud. Bioinform. 28 (2) (2012)
Haiying Wang, Huiru Zheng, Francisco Azuaje, Xing-Ming Zhao
Drug-target network in myocardial infarction: A structural analysis. BIBM (2012)
Francisco Azuaje, Michaël Heymann, Anne-Marie Ternes, Anke Wienecke-Baldacchino, Daniel Struck, Danièle Moes, Reinhard Schneider
Benelux bioinformatics conference. J. Clin. Bioinform. 2 (2012)
Isabel A. Nepomuceno-Chamorro, Francisco Azuaje, Yvan Devaux, Petr V. Nazarov, Arnaud Muller, Jesús S. Aguilar-Ruiz, Daniel R. Wagner
Prognostic transcriptional association networks: a new supervised approach based on regression trees. Bioinform. 27 (2) (2011)
Francisco Azuaje, Haiying Wang, Huiru Zheng, Frédérique Léonard, Magali Rolland-Turner, Lu Zhang, Yvan Devaux, Daniel R. Wagner
Predictive integration of gene functional similarity and co-expression defines treatment response of endothelial progenitor cells. BMC Syst. Biol. 5 (2011)
Francisco Azuaje
Computational discrete models of tissue growth and regeneration. Briefings Bioinform. 12 (1) (2011)
Francisco Azuaje, Huiru Zheng, Anyela Camargo, Haiying Wang
Systems-based biological concordance and predictive reproducibility of gene set discovery methods in cardiovascular disease. J. Biomed. Informatics 44 (4) (2011)
Huiru Zheng, Francisco Azuaje, Haiying Wang
seGOsa: Software environment for gene ontology-driven similarity assessment. BIBM (2010)
Huiru Zheng, Haiying Wang, Francisco Azuaje
eNelator: A simulation system for large-scale vulnerability analysis of species-, disease- and process-specific protein networks. J. Comput. Sci. 1 (4) (2010)
Haiying Wang, Huiru Zheng, Francisco Azuaje
Ontology- and graph-based similarity assessment in biological networks. Bioinform. 26 (20) (2010)
Haiying Wang, Huiru Zheng, Fiona Browne, David H. Glass, Francisco Azuaje
Integration of Gene Ontology-based similarities for supporting analysis of protein-protein interaction networks. Pattern Recognit. Lett. 31 (14) (2010)
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
A knowledge-driven probabilistic framework for the prediction of protein-protein interaction networks. Comput. Biol. Medicine 40 (3) (2010)
Francisco Azuaje, Yvan Devaux, Daniel R. Wagner
Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network. BMC Syst. Biol. 4 (2010)
Fiona Browne, Huiru Zheng, Haiying Wang, Francisco Azuaje
From Experimental Approaches to Computational Techniques: A Review on the Prediction of Protein-Protein Interactions. Adv. Artif. Intell. 2010 (2010)
Francisco Azuaje, Yvan Devaux, Melanie Vausort, Céline Yvorra, Daniel R. Wagner
Transcriptional networks characterize ventricular dysfunction after myocardial infarction: A proof-of-concept investigation. J. Biomed. Informatics 43 (5) (2010)
Francisco Azuaje, Yvan Devaux, Daniel R. Wagner
Identification of potential targets in biological signalling systems through network perturbation analysis. Biosyst. 100 (1) (2010)
Jaine K. Blayney, Huiru Zheng, Haiying Wang, Francisco Azuaje
Multi-level integrative analysis of Protein - Protein Interaction networks: connecting completeness, depth and robustness. Int. J. Comput. Biol. Drug Des. 3 (1) (2010)
Oliver Schmidt, José López, Francisco Azuaje, Paul Thompson, Martin T. Swain, Werner Dubitzky
A standard-compliant global map of the bile acid/xenobiotic signaling network: Construction and automated query processing. BIOCOMP (2009)
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction. Source Code Biol. Medicine 4 (2009)
Francisco Azuaje, Yvan Devaux, Daniel R. Wagner
Computational biology for cardiovascular biomarker discovery. Briefings Bioinform. 10 (4) (2009)
Ana M. González, Francisco Azuaje, Jose L. Ramirez, Jose F. da Silveira, José R. Dorronsoro
Machine Learning Techniques for the Automated Classification of Adhesin-Like Proteins in the Human Protozoan Parasite Trypanosoma cruzi. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (4) (2009)
Jaine K. Blayney, Haiying Wang, Huiru Zheng, Francisco Azuaje
Assessing the impact of network depth on the analysis of PPI networks: A case study. CIBCB (2009)
Jaine K. Blayney, Huiru Zheng, Haiying Wang, Francisco Azuaje
Assessing the Most Effective Depth for PPI Analysis. IJCBS (2009)
Anyela Camargo, Francisco Azuaje, Haiying Wang, Huiru Zheng
Permutation - based statistical tests for multiple hypotheses. Source Code Biol. Medicine 3 (2008)
Gary B. Fogel, Eric Bullinger, S. F. Su, Francisco Azuaje
Special Section on Machine Intelligence Approaches to Systems Biology. IEEE Trans. Syst. Man Cybern. Part B 38 (1) (2008)
Huiru Zheng, Haiying Wang, Francisco Azuaje
Improving Pattern Discovery and Visualization of SAGE Data Through Poisson-Based Self-Adaptive Neural Networks. IEEE Trans. Inf. Technol. Biomed. 12 (4) (2008)
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
Computational prediction of protein interaction networks through supervised classification techniques. Int. J. Funct. Informatics Pers. Medicine 1 (2) (2008)
Haiying Wang, Huiru Zheng, Francisco Azuaje
Clustering-based approaches to SAGE data mining. BioData Min. 1 (2008)
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
Reassessing the limit of data integration for the prediction of protein-protein interactions in Saccharomyces cerevisiae. CIBCB (2008)
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
Supervised Statistical and Machine Learning Approaches to Inferring Pairwise and Module-Based Protein Interaction Networks. BIBE (2007)
Haiying Wang, Huiru Zheng, Francisco Azuaje
Self-Adaptive Neural Networks Based on a Poisson Approach for Knowledge Discovery. IJCAI (2007)
Anyela Camargo, Francisco Azuaje
Integration and analysis of heterogeneous microarray data sources for supporting drug target identification in atherosclerosis. BMC Syst. Biol. 1 (S-1) (2007)
Ignacio Ponzoni, Francisco Azuaje, Juan Carlos Augusto, David H. Glass
Inferring Adaptive Regulation Thresholds and Association Rules from Gene Expression Data through Combinatorial Optimization Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (4) (2007)
Haiying Wang, Huiru Zheng, Francisco Azuaje
Poisson-Based Self-Organizing Feature Maps and Hierarchical Clustering for Serial Analysis of Gene Expression Data. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (2) (2007)
Peyman Jafari, Francisco Azuaje
An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors. BMC Medical Informatics Decis. Mak. 6 (2006)
Yongyang Huo, Francisco Azuaje, Paul J. McCullagh, Roy Harper
Semi-Supervised Clustering Models for Clinical Risk Assessment. BIBE (2006)
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje
An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions. J. Integr. Bioinform. 3 (2) (2006)
Nadia Bolshakova, Francisco Azuaje, Padraig Cunningham
Incorporating Biological Domain Knowledge into Cluster Validity Assessment. EvoWorkshops (2006)
Marisol Giardina, Francisco Azuaje, Paul J. McCullagh, Roy Harper
A Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients. BIBE (2006)
Haiying Wang, Huiru Zheng, David Simpson, Francisco Azuaje
Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data. BMC Bioinform. 7 (2006)
Francisco Azuaje, Haiying Wang, Huiru Zheng, Olivier Bodenreider, Alban Chesneau
Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions. ICDM Workshops (2006)
Haiying Wang, Huiru Zheng, Francisco Azuaje
Computational Approaches to Supporting Large-Scale Analysis of Photoreceptor-Enriched Gene Expression. CBMS (2006)
Nadia Bolshakova, Francisco Azuaje, Padraig Cunningham
A knowledge-driven approach to cluster validity assessment. Bioinform. 21 (10) (2005)
Francisco Azuaje
Integrative data analysis for functional prediction: a multi-objective optimization approach. Bioinform. 21 (9) (2005)
Francisco Azuaje, Haiying Wang, Alban Chesneau
Non-linear mapping for exploratory data analysis in functional genomics. BMC Bioinform. 6 (2005)
Haiying Wang, Francisco Azuaje, Olivier Bodenreider
An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis. CBMS (2005)
Nadia Bolshakova, Francisco Azuaje, Padraig Cunningham
An integrated tool for microarray data clustering and cluster validity assessment . Bioinform. 21 (4) (2005)
Marisol Giardina, Yongyang Huo, Francisco Azuaje, Paul J. McCullagh, Roy Harper
A Missing Data Estimation Analysis in Type II Diabetes Databases. CBMS (2005)
Jesús S. Aguilar-Ruiz, Francisco Azuaje
Knowledge Discovery in Lymphoma Cancer from Gene-Expression. IDEAL (2004)
Dan Sprevak, Francisco Azuaje, Haiying Wang
A Non-Random Data Sampling Method for Classification Model Assessment. ICPR (3) (2004)
Nadia Bolshakova, Francisco Azuaje, Padraig Cunningham
An integrated tool for microarray data clustering and cluster validity assessment. SAC (2004)
Haiying Wang, Francisco Azuaje, Norman D. Black
Interactive GSOM-Based Approaches for Improving Biomedical Pattern Discovery and Visualization. CIS (2004)
Haiying Wang, Francisco Azuaje, Norman D. Black
An integrative and interactive framework for improving biomedical pattern discovery and visualization. IEEE Trans. Inf. Technol. Biomed. 8 (1) (2004)
Haiying Wang, Francisco Azuaje, Olivier Bodenreider, Joaquín Dopazo
Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships. CIBCB (2004)
Francisco Azuaje
Reply to comments on 'A computational evolutionary approach to evolving game strategy and Cooperation'. IEEE Trans. Syst. Man Cybern. Part B 34 (3) (2004)
Francisco Azuaje, Olivier Bodenreider
Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study. BIBE (2004)
Jesús S. Aguilar-Ruiz, Francisco Azuaje, José Cristóbal Riquelme Santos
Data Mining Approaches to Diffuse Large B-Cell Lymphoma Gene Expression Data Interpretation. DaWaK (2004)
Francisco Azuaje
Clustering-based Approaches to Discovering and Visualising Microarray Data Patterns. Briefings Bioinform. 4 (1) (2003)
Nadia Bolshakova, Francisco Azuaje
Cluster validation techniques for genome expression data. Signal Process. 83 (4) (2003)
Francisco Azuaje
Genomic data sampling and its effect on classification performance assessment. BMC Bioinform. 4 (2003)
Werner Dubitzky, Francisco Azuaje
Editorial - AI in the Life Sciences. Artif. Intell. Rev. 20 (1-2) (2003)
Francisco Azuaje
An Immune-inspired Approach to Learning and Classification. Applied Informatics (2003)
Francisco Azuaje
A computational evolutionary approach to evolving game strategy and cooperation. IEEE Trans. Syst. Man Cybern. Part B 33 (3) (2003)
Haiying Wang, Francisco Azuaje, Benjamin Jung, Norman D. Black
A markup language for electrocardiogram data acquisition and analysis (ecgML). BMC Medical Informatics Decis. Mak. 3 (2003)
Nadia Bolshakova, Francisco Azuaje
Machaon CVE: cluster validation for gene expression data. Bioinform. 19 (18) (2003)
Francisco Azuaje
A cluster validity framework for genome expression data. Bioinform. 18 (2) (2002)
Francisco Azuaje
A computational neural approach to support the discovery of gene function and classes of cancer. IEEE Trans. Biomed. Eng. 48 (3) (2001)
Francisco Azuaje
Adaptation and reverse evolution in a digital ecosystem. SMC (2001)
Francisco Azuaje
Making genome expression data meaningful: Prediction and discovery of classes of cancer through a connectionist learning approach. BIBE (2000)
Francisco Azuaje, Werner Dubitzky, Norman D. Black, Kenneth Adamson
Discovering relevance knowledge in data: a growing cell structures approach. IEEE Trans. Syst. Man Cybern. Part B 30 (3) (2000)
Francisco Azuaje, Werner Dubitzky, Norman D. Black, Kenny Adamson
Retrieval strategies for case-based reasoning: a categorised bibliography. Knowl. Eng. Rev. 15 (4) (2000)
Francisco Azuaje, Werner Dubitzky, Philippe Lopes, Norman D. Black, Kenneth Adamson, X. Wu, John A. White
Predicting coronary disease risk based on short-term RR interval measurements: a neural network approach. Artif. Intell. Medicine 15 (3) (1999)
Francisco Azuaje, Werner Dubitzky, Norman D. Black, Kenny Adamson
Improving clinical decision support through case-based data fusion. IEEE Trans. Biomed. Eng. 46 (10) (1999)
Werner Dubitzky, Francisco Azuaje, Philippe Lopes, Paul J. McCullagh, Y. Song
On local and global feature weight discovery for case-based reasoning. CATA (1999)