Jesús S. Aguilar-Ruiz

ORCID

Publication Activity (10 Years)

Years Active: 1998-2023
Publications (10 Years): 15

Top Venues

Publications

Marcin Michalak, Jesús S. Aguilar-Ruiz
Shifting Pattern Biclustering and Boolean Reasoning Symmetry. Symmetry 15 (11) (2023)
Ralf E. Wellinger, Jesús S. Aguilar-Ruiz
A new challenge for data analytics: transposons. BioData Min. 15 (1) (2022)
Jesús S. Aguilar-Ruiz, Marcin Michalak
Multiclass Classification Performance Curve. IEEE Access 10 (2022)
Diana C. Pauca-Quispe, Cinthya Butron-Revilla, Ernesto Suarez-Lopez, Karla Aranibar-Tila, Jesús S. Aguilar-Ruiz
Land use identification through social network interaction. CoRR (2021)
Marcin Michalak, Jesús S. Aguilar-Ruiz
Boolean Reasoning-Based Biclustering for Shifting Pattern Extraction. CoRR (2021)
Juan A. Nepomuceno, Alicia Troncoso, Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz
Pairwise gene GO-based measures for biclustering of high-dimensional expression data. BioData Min. 11 (1) (2018)
Francisco Javier Gil-Cumbreras, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Extending Probabilistic Encoding for Discovering Biclusters in Gene Expression Data. HAIS (2016)
Juan A. Nepomuceno, Alicia Troncoso, Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz
Biclustering of Gene Expression Data Based on SimUI Semantic Similarity Measure. HAIS (2016)
Isabel A. Nepomuceno-Chamorro, Alfonso E. Márquez Chamorro, Jesús S. Aguilar-Ruiz
Building Transcriptional Association Networks in Cytoscape with RegNetC. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (4) (2015)
Juan A. Nepomuceno, Alicia Troncoso, Jesús S. Aguilar-Ruiz
Scatter search-based identification of local patterns with positive and negative correlations in gene expression data. Appl. Soft Comput. 35 (2015)
Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Biclustering on expression data: A review. J. Biomed. Informatics 57 (2015)
Juan A. Nepomuceno, Alicia Troncoso Lora, Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz
Integrating biological knowledge based on functional annotations for biclustering of gene expression data. Comput. Methods Programs Biomed. 119 (3) (2015)
Cosme Ernesto Santiesteban-Toca, Jesús S. Aguilar-Ruiz
A new multiple classifier system for the prediction of protein's contacts map. Inf. Process. Lett. 115 (12) (2015)
Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz, Alfonso E. Márquez Chamorro
An Efficient Nearest Neighbor Method for Protein Contact Prediction. HAIS (2015)
Alfonso E. Márquez Chamorro, Gualberto Asencio-Cortés, Cosme Ernesto Santiesteban-Toca, Jesús S. Aguilar-Ruiz
Soft computing methods for the prediction of protein tertiary structures: A survey. Appl. Soft Comput. 35 (2015)
Dayrelis Mena Torres, Jesús S. Aguilar-Ruiz
A similarity-based approach for data stream classification. Expert Syst. Appl. 41 (9) (2014)
Alfonso E. Márquez Chamorro, Gualberto Asencio-Cortés, Federico Divina, Jesús S. Aguilar-Ruiz
Evolutionary decision rules for predicting protein contact maps. Pattern Anal. Appl. 17 (4) (2014)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Cosme Ernesto Santiesteban-Toca
Improving the Efficiency of MECoMaP: A Protein Residue-Residue Contact Predictor. CIARP (2) (2013)
Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Configurable pattern-based evolutionary biclustering of gene expression data. Algorithms Mol. Biol. 8 (2013)
Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz
Synergies of genes in Alzheimer's disease. IWBBIO (2013)
Alfonso E. Márquez Chamorro, Federico Divina, Jaume Bacardit, Jesús S. Aguilar-Ruiz
An efficient decision rule-based system for the protein residue-residue contact prediction. IEEE Congress on Evolutionary Computation (2013)
Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz, Alfonso E. Márquez Chamorro, Roberto Ruiz, Cosme Ernesto Santiesteban-Toca
Prediction of Mitochondrial Matrix Protein Structures Based on Feature Selection and Fragment Assembly. EvoBIO (2012)
Cosme Ernesto Santiesteban-Toca, Gualberto Asencio-Cortés, Alfonso E. Márquez Chamorro, Jesús S. Aguilar-Ruiz
Short-Range Interactions and Decision Tree-Based Protein Contact Map Predictor. EvoBIO (2012)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Jaume Bacardit, Gualberto Asencio-Cortés, Cosme Ernesto Santiesteban-Toca
A NSGA-II Algorithm for the Residue-Residue Contact Prediction. EvoBIO (2012)
Federico Divina, Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz
An effective measure for assessing the quality of biclusters. Comput. Biol. Medicine 42 (2) (2012)
Dayrelis Mena Torres, Jesús S. Aguilar-Ruiz, Yanet Rodríguez Sarabia
An Instance Based Learning Model for Classification in Data Streams with Concept Change. MICAI (Special Sessions) (2012)
Jaume Bacardit, Pawel Widera, Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Natalio Krasnogor
Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features. Bioinform. 28 (19) (2012)
Daniel Rodríguez, Roberto Ruiz, José C. Riquelme, Jesús S. Aguilar-Ruiz
Searching for rules to detect defective modules: A subgroup discovery approach. Inf. Sci. 191 (2012)
Cosme Ernesto Santiesteban-Toca, Milton García-Borroto, Jesús S. Aguilar-Ruiz
Using Short-Range Interactions and Simulated Genetic Strategy to Improve the Protein Contact Map Prediction. MCPR (2012)
Roberto Ruiz, José C. Riquelme, Jesús S. Aguilar-Ruiz, Miguel García-Torres
Fast feature selection aimed at high-dimensional data via hybrid-sequential-ranked searches. Expert Syst. Appl. 39 (12) (2012)
Domingo S. Rodríguez-Baena, Antonio J. Pérez-Pulido, Jesús S. Aguilar-Ruiz
A biclustering algorithm for extracting bit-patterns from binary datasets. Bioinform. 27 (19) (2011)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz
Inferring gene coexpression networks with Biclustering based on Scatter Search. ISDA (2011)
Isabel A. Nepomuceno-Chamorro, Francisco Azuaje, Yvan Devaux, Petr V. Nazarov, Arnaud Muller, Jesús S. Aguilar-Ruiz, Daniel R. Wagner
Prognostic transcriptional association networks: a new supervised approach based on regression trees. Bioinform. 27 (2) (2011)
Norberto Díaz-Díaz, Jesús S. Aguilar-Ruiz
GO-based Functional Dissimilarity of Gene Sets. BMC Bioinform. 12 (2011)
Norberto Díaz-Díaz, Francisco Gómez-Vela, Domingo S. Rodríguez-Baena, Jesús S. Aguilar-Ruiz
Gene Regulatory Networks Validation Framework Based in KEGG. HAIS (2) (2011)
Cosme Ernesto Santiesteban-Toca, Alfonso E. Márquez Chamorro, Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz
A Decision Tree-Based Method for Protein Contact Map Prediction. EvoBio (2011)
Norberto Díaz-Díaz, Francisco Gómez-Vela, Jesús S. Aguilar-Ruiz, Jorge García-Gutiérrez
Gene-gene interaction based clustering method for microarray data. ISDA (2011)
Francisco Martínez-Álvarez, Alicia Troncoso Lora, José C. Riquelme, Jesús S. Aguilar-Ruiz
Discovery of motifs to forecast outlier occurrence in time series. Pattern Recognit. Lett. 32 (12) (2011)
Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Evolutionary biclustering based on expression patterns. ISDA (2011)
Francisco Gómez-Vela, Francisco Martínez-Álvarez, Carlos D. Barranco, Norberto Díaz-Díaz, Domingo S. Rodríguez-Baena, Jesús S. Aguilar-Ruiz
Pattern Recognition in Biological Time Series. CAEPIA (2011)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Gualberto Asencio-Cortés
A multi-objective genetic algorithm for the Protein Structure Prediction. ISDA (2011)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Gualberto Asencio-Cortés
An Evolutionary Approach for Protein Contact Map Prediction. EvoBio (2011)
Francisco Martínez-Álvarez, Alicia Troncoso Lora, José C. Riquelme, Jesús S. Aguilar-Ruiz
Energy Time Series Forecasting Based on Pattern Sequence Similarity. IEEE Trans. Knowl. Data Eng. 23 (8) (2011)
Francisco Gómez-Vela, Norberto Díaz-Díaz, Jesús S. Aguilar-Ruiz
Gene Networks Validation based on Metabolic Pathways. BIBE (2011)
Cosme Ernesto Santiesteban-Toca, Jesús S. Aguilar-Ruiz
DTP: Decision Tree-Based Predictor of Protein Contact Map. IEA/AIE (2) (2011)
Michaël Marcozzi, Federico Divina, Jesús S. Aguilar-Ruiz, Wim Vanhoof
A novel probabilistic encoding for EAs applied to biclustering of microarray data. GECCO (2011)
Dayrelis Mena Torres, Jesús S. Aguilar-Ruiz, Yanet Rodríguez Sarabia
Classification Model for Data Streams Based on Similarity. IEA/AIE (1) (2011)
Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz, Alfonso E. Márquez Chamorro
A Nearest Neighbour-Based Approach for Viral Protein Structure Prediction. EvoBio (2011)
Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz, Alfonso E. Márquez Chamorro
Prediction of Protein Distance Maps by Assembling Fragments According to Physicochemical Similarities. PACBB (2011)
Gualberto Asencio-Cortés, Jesús S. Aguilar-Ruiz
Predicting protein distance maps according to physicochemical properties. J. Integr. Bioinform. 8 (3) (2011)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz
Evolutionary Protein Contact Maps Prediction Based on Amino Acid Properties. HAIS (2) (2011)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Gualberto Asencio-Cortés
Residue-Residue Contact Prediction Based on Evolutionary Computation. PACBB (2011)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz
Evolutionary computation for the prediction of secondary protein structures. SAC (2011)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz
A local search in Scatter Search for improving Biclusters. NaBIC (2011)
Jesús S. Aguilar-Ruiz, Domingo S. Rodríguez-Baena, Norberto Díaz-Díaz, Isabel A. Nepomuceno-Chamorro
CarGene: Characterisation of sets of genes based on metabolic pathways analysis. Int. J. Data Min. Bioinform. 5 (5) (2011)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz
Biclustering of Gene Expression Data by Correlation-Based Scatter Search. BioData Min. 4 (2011)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz
Correlation-Based Scatter Search for Discovering Biclusters from Gene Expression Data. EvoBIO (2010)
Alfonso E. Márquez Chamorro, Federico Divina, Jesús S. Aguilar-Ruiz, Gualberto Asencio-Cortés
Alpha Helix Prediction Based on Evolutionary Computation. PRIB (2010)
Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz, José C. Riquelme
Inferring gene regression networks with model trees. BMC Bioinform. 11 (2010)
Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Measuring the Quality of Shifting and Scaling Patterns in Biclusters. PRIB (2010)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz
Evolutionary metaheuristic for biclustering based on linear correlations among genes. SAC (2010)
Ronnie Alves, Domingo S. Rodríguez-Baena, Jesús S. Aguilar-Ruiz
Gene association analysis: a survey of frequent pattern mining from gene expression data. Briefings Bioinform. 11 (2) (2010)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz
An Overlapping Control-Biclustering Algorithm from Gene Expression Data ISDA (2009)
Beatriz Pontes, Federico Divina, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Improved biclustering on expression data through overlapping control. Int. J. Intell. Comput. Cybern. 2 (3) (2009)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz
A Hybrid Metaheuristic for Biclustering Based on Scatter Search and Genetic Algorithms. PRIB (2009)
João Gama, André Carlos Ponce de Leon Ferreira de Carvalho, Jesús S. Aguilar-Ruiz
Special track on Data Streams: editorial message. SAC (2008)
Roberto Ruiz, José C. Riquelme, Jesús S. Aguilar-Ruiz
Best Agglomerative Ranked Subset for Feature Selection. FSDM (2008)
Jesús S. Aguilar-Ruiz, Jason H. Moore, Marylyn D. Ritchie
Filling the gap between biology and computer science. BioData Min. 1 (2008)
João Gama, Jesús S. Aguilar-Ruiz, Ralf Klinkenberg
Knowledge discovery from data streams. Intell. Data Anal. 12 (3) (2008)
Alicia Troncoso Lora, José Cristóbal Riquelme Santos, Jesús S. Aguilar-Ruiz, Jesús Manuel Riquelme-Santos
Evolutionary techniques applied to the optimal short-term scheduling of the electrical energy production. Eur. J. Oper. Res. 185 (3) (2008)
Francisco Martínez-Álvarez, Alicia Troncoso Lora, José C. Riquelme, Jesús S. Aguilar-Ruiz
LBF: A Labeled-Based Forecasting Algorithm and Its Application to Electricity Price Time Series. ICDM (2008)
Beatriz Pontes, Federico Divina, Raúl Giráldez, Jesús S. Aguilar-Ruiz
A Novel Approach for Avoiding Overlapping Among Biclusters in Expression Data. HIS (2008)
Francisco Martínez-Álvarez, Alicia Troncoso Lora, José Cristóbal Riquelme Santos, Jesús S. Aguilar-Ruiz
Detection of Microcalcifications in Mammographies Based on Linear Pixel Prediction and Support-Vector Machines. CBMS (2007)
Jesús S. Aguilar-Ruiz, Raúl Giráldez, José Cristóbal Riquelme Santos
Natural Encoding for Evolutionary Supervised Learning. IEEE Trans. Evol. Comput. 11 (4) (2007)
Domingo S. Rodríguez-Baena, Norberto Díaz-Díaz, Jesús S. Aguilar-Ruiz, Isabel A. Nepomuceno-Chamorro
-Patterns from Gene Expression Data. IDEAL (2007)
Daniel Rodríguez, Roberto Ruiz, Juan Jose Cuadrado-Gallego, Jesús S. Aguilar-Ruiz
Detecting Fault Modules Applying Feature Selection to Classifiers. IRI (2007)
Francisco J. Ferrer-Troyano, Jesús S. Aguilar-Ruiz, José C. Riquelme
FACIL - An approach for classifying data streams by decision rules and border examples. Monde des Util. Anal. Données 36 (2007)
Juan A. Nepomuceno, Alicia Troncoso Lora, Jesús S. Aguilar-Ruiz, Jorge García-Gutiérrez
Biclusters Evaluation Based on Shifting and Scaling Patterns. IDEAL (2007)
Federico Divina, Jesús S. Aguilar-Ruiz
A multi-objective approach to discover biclusters in microarray data. GECCO (2007)
Jesús S. Aguilar-Ruiz
Rule learning from data streams: an overview. Monde des Util. Anal. Données 36 (2007)
Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz, Norberto Díaz-Díaz, Domingo S. Rodríguez-Baena, Jorge García-Gutiérrez
A Deterministic Model to Infer Gene Networks from Microarray Data. IDEAL (2007)
Beatriz Pontes, Federico Divina, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Virtual Error: A New Measure for Evolutionary Biclustering. EvoBIO (2007)
Daniel Rodríguez, Roberto Ruiz, Juan Jose Cuadrado-Gallego, Jesús S. Aguilar-Ruiz, Miguel Garre
Attribute Selection in Software Engineering Datasets for Detecting Fault Modules. EUROMICRO-SEAA (2007)
Raúl Giráldez, Federico Divina, Beatriz Pontes, Jesús S. Aguilar-Ruiz
Evolutionary Search of Biclusters by Minimal Intrafluctuation. FUZZ-IEEE (2007)
João Gama, Pedro Pereira Rodrigues, Jesús S. Aguilar-Ruiz
An Overview on Learning from Data Streams. New Gener. Comput. 25 (1) (2006)
Roberto Ruiz Sánchez, José Cristóbal Riquelme Santos, Jesús S. Aguilar-Ruiz
Incremental wrapper-based gene selection from microarray data for cancer classification. Pattern Recognit. 39 (12) (2006)
Norberto Díaz-Díaz, Domingo S. Rodríguez-Baena, Isabel A. Nepomuceno-Chamorro, Jesús S. Aguilar-Ruiz
Neighborhood-Based Clustering of Gene-Gene Interactions. IDEAL (2006)
Francisco J. Ferrer-Troyano, Jesús S. Aguilar-Ruiz, José Cristóbal Riquelme Santos
Data streams classification by incremental rule learning with parameterized generalization. SAC (2006)
José Cristóbal Riquelme Santos, Macario Polo, Jesús S. Aguilar-Ruiz, Mario Piattini, Francisco J. Ferrer-Troyano, Francisco Ruiz
A Comparison of Effort Estimation Methods for 4gl Programs: Experiences with Statistics and Data Mining. Int. J. Softw. Eng. Knowl. Eng. 16 (1) (2006)
Roberto Ruiz, Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Gene Ranking from Microarray Data for Cancer Classification-A Machine Learning Approach. KES (2) (2006)
Jesús S. Aguilar-Ruiz, Juan A. Nepomuceno, Norberto Díaz-Díaz, Isabel A. Nepomuceno-Chamorro
A Measure for Data Set Editing by Ordered Projections. IEA/AIE (2006)
Jesús S. Aguilar-Ruiz, Francisco J. Ferrer-Troyano
Editorial message: special track on data streams. SAC (2006)
Isabel A. Nepomuceno-Chamorro, Juan A. Nepomuceno, Roberto Ruiz Sánchez, Jesús S. Aguilar-Ruiz
Databases Reduction Simultaneously by Ordered Projection. Discovery Science (2006)
Jesús S. Aguilar-Ruiz, Domingo S. Rodríguez, Dan A. Simovici
Biclustering of Gene Expression Data Based on Local Nearness. EGC (2006)
Federico Divina, Jesús S. Aguilar-Ruiz
Biclustering of Expression Data with Evolutionary Computation. IEEE Trans. Knowl. Data Eng. 18 (5) (2006)
Beatriz Pontes, Raúl Giráldez, Jesús S. Aguilar-Ruiz
Shifting Patterns Discovery in Microarrays with Evolutionary Algorithms. KES (2) (2006)
Jesús S. Aguilar-Ruiz, João Gama
Data Streams J.UCS Special Issue. J. Univers. Comput. Sci. 11 (8) (2005)
Jesús S. Aguilar-Ruiz, Federico Divina
Evolutionary computation for biclustering of gene expression. SAC (2005)
Jesús S. Aguilar-Ruiz, S. Muthukrishnan
Editorial message: special track on data streams. SAC (2005)
Jesús S. Aguilar-Ruiz, Federico Divina
GA-based approach to discover meaningful biclusters. GECCO (2005)

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Publication Activity (10 Years)

Top Topics

Top Venues

Jesús S. Aguilar-Ruiz