James M. Osborne

Publication Activity (10 Years)

Years Active: 2009-2024
Publications (10 Years): 14

Top Topics

Immune Response

Energy Landscape

Elastic Properties

Top Venues

PLoS Comput. Biol.

Nat. Comput. Sci.

Publications

Domenic P. J. Germano, James M. Osborne
Advancements in multicellular simulations. Nat. Comput. Sci. 4 (5) (2024)
Ivo Siekmann, James M. Osborne
Editorial: Do individuals matter? - Individual-based versus population-based models applied to biology and health. Frontiers Appl. Math. Stat. 9 (2023)
Jessica R. Crawshaw, Jennifer A. Flegg, Miguel O. Bernabeu, James M. Osborne
Mathematical models of developmental vascular remodelling: A review. PLoS Comput. Biol. 19 (8) (2023)
Claire Miller, Edmund J. Crampin, James M. Osborne
Multiscale modelling of desquamation in the interfollicular epidermis. PLoS Comput. Biol. 18 (8) (2022)
Jessica R. Crawshaw, Jennifer A. Flegg, James M. Osborne
A simple history-dependent remeshing technique to increase finite element model stability in elastic surface deformations. J. Comput. Appl. Math. 405 (2022)
Phillip J. Brown, J. Edward F. Green, Benjamin J. Binder, James M. Osborne
Publisher Correction: A rigid body framework for multicellular modeling. Nat. Comput. Sci. 2 (1) (2022)
Phillip J. Brown, J. Edward F. Green, Benjamin J. Binder, James M. Osborne
A rigid body framework for multicellular modeling. Nat. Comput. Sci. 1 (11) (2021)
T. J. Sego, Josua Aponte-Serrano, Juliano Ferrari Gianlupi, Samuel R. Heaps, Kira Breithaupt, Lutz Brusch, Jessica Crawshaw, James M. Osborne, Ellen M. Quardokus, Richard K. Plemper, James A. Glazier
A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness. PLoS Comput. Biol. 16 (12) (2020)
Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5 (47) (2020)
Jessica R. Crawshaw, Jennifer A. Flegg, James M. Osborne
A simple history dependent remeshing technique to increase finite element model stability in elastic surface deformations. CoRR (2020)
Lotte B. Romijn, Axel A. Almet, Chin Wee Tan, James M. Osborne
Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt. BMC Bioinform. 21 (1) (2020)
James M. Osborne, Miguel O. Bernabeu
A Fully Discrete Open Source Framework for the Simulation of Vascular Remodelling. EMBC (2018)
James M. Osborne, Alexander G. Fletcher, Joe Pitt-Francis, Philip K. Maini, David J. Gavaghan
Comparing individual-based approaches to modelling the self-organization of multicellular tissues. PLoS Comput. Biol. 13 (2) (2017)
Sophie K. Kay, Heather A. Harrington, Sarah Shepherd, Keith Brennan, Trevor Dale, James M. Osborne, David J. Gavaghan, Helen M. Byrne
The role of the Hes1 crosstalk hub in Notch-Wnt interactions of the intestinal crypt. PLoS Comput. Biol. 13 (2) (2017)
Daniel G. Harvey, Alexander G. Fletcher, James M. Osborne, Joe Pitt-Francis
A parallel implementation of an off-lattice individual-based model of multicellular populations. Comput. Phys. Commun. 192 (2015)
Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11 (4) (2015)
Derek Groen, Xiaohu Guo, James A. Grogan, Ulf D. Schiller, James M. Osborne
Software development practices in academia: a case study comparison. CoRR (2015)
Thomas A. Dunton, Joseph E. Goose, David J. Gavaghan, Mark S. P. Sansom, James M. Osborne
The Free Energy Landscape of Dimerization of a Membrane Protein, NanC. PLoS Comput. Biol. 10 (1) (2014)
James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10 (3) (2014)
Jonathan Cooper, James M. Osborne
Connecting Models to Data in Multiscale Multicellular Tissue Simulations. ICCS (2013)
Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9 (3) (2013)
Sara-Jane Dunn, Paul L. Appleton, Scott A. Nelson, Inke S. Näthke, David Gavaghan, James M. Osborne
A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath. PLoS Comput. Biol. 8 (5) (2012)
Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180 (12) (2009)