David Gavaghan

Publication Activity (10 Years)

Years Active: 2000-2023
Publications (10 Years): 5

Top Topics

Hierarchical Bayesian

Scientific Computing

Top Venues

PLoS Comput. Biol.

Future Gener. Comput. Syst.

Publications

David Augustin, Ben Lambert, Ken Wang, Antje-Christine Walz, Martin Robinson, David Gavaghan
Filter inference: A scalable nonlinear mixed effects inference approach for snapshot time series data. PLoS Comput. Biol. 19 (5) (2023)
Graham Lee, Sebastian Bacon, Ian Bush, Laura Fortunato, David Gavaghan, Thibault Lestang, Caroline Morton, Martin Robinson, Philippe Rocca-Serra, Susanna-Assunta Sansone, Helena Webb
Barely sufficient practices in scientific computing. Patterns 2 (2) (2021)
Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5 (47) (2020)
Thomas Foster, Chon Lok Lei, Martin Robinson, David Gavaghan, Ben Lambert
Model Evidence with Fast Tree Based Quadrature. CoRR (2020)
Ross Johnstone, Rémi Bardenet, David Gavaghan, Liudmila Polonchuk, Mark Davies, Gary R. Mirams
Hierarchical Bayesian Modelling of Variability and Uncertainty in Synthetic Action Potential Traces. CinC (2016)
Bernhard Knapp, Rémi Bardenet, Miguel O. Bernabeu, Rafel Bordas, Maria Bruna, Ben Calderhead, Jonathan Cooper, Alexander G. Fletcher, Derek Groen, Bram Kuijper, Joanna Lewis, Greg J. McInerny, Timo Minssen, James M. Osborne, Verena Paulitschke, Joe Pitt-Francis, Jelena Todoric, Christian A. Yates, David Gavaghan, Charlotte M. Deane
Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. PLoS Comput. Biol. 11 (4) (2015)
Mandeep Gill, Steve McKeever, David Gavaghan
Model Composition for Biological Mathematical Systems. MODELSWARD (2014)
James M. Osborne, Miguel O. Bernabeu, Maria Bruna, Ben Calderhead, Jonathan Cooper, Neil Dalchau, Sara-Jane Dunn, Alexander G. Fletcher, Robin Freeman, Derek Groen, Bernhard Knapp, Greg J. McInerny, Gary R. Mirams, Joe Pitt-Francis, Biswa Sengupta, David W. Wright, Christian A. Yates, David Gavaghan, Stephen Emmott, Charlotte M. Deane
Ten Simple Rules for Effective Computational Research. PLoS Comput. Biol. 10 (3) (2014)
Anna Sher, Ken Wang, Andrew J. Wathen, Philip John Maybank, Gary R. Mirams, David Abramson, Denis Noble, David Gavaghan
A local sensitivity analysis method for developing biological models with identifiable parameters: Application to cardiac ionic channel modelling. Future Gener. Comput. Syst. 29 (2) (2013)
Gary R. Mirams, Christopher J. Arthurs, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alberto Corrias, Yohan Davit, Sara-Jane Dunn, Alexander G. Fletcher, Daniel G. Harvey, Megan E. Marsh, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, James Southern, Nejib Zemzemi, David Gavaghan
Chaste: An Open Source C++ Library for Computational Physiology and Biology. PLoS Comput. Biol. 9 (3) (2013)
Rafel Bordas, Kathryn Gillow, David Gavaghan, Blanca Rodríguez, David Kay
A Bidomain Model of the Ventricular Specialized Conduction System of the Heart. SIAM J. Appl. Math. 72 (5) (2012)
Mandeep Gill, Steve McKeever, David Gavaghan
Modules for Reusable and Collaborative Modelling of Biological Mathematical Systems. WETICE (2012)
Mandeep Gill, Steve McKeever, David Gavaghan
Modular mathematical modelling of biological systems. SpringSim (TMS-DEVS) (2012)
Matthew Gibb, Rebecca Burton, Christian Bollensdorff, Carlos Afonso, Tahier Mansoori, Ulrich Schotten, David Gavaghan, Blanca Rodríguez, Jürgen E. Schneider, Peter Kohl, Vicente Grau
Resolving the Three-Dimensional Histology of the Heart. CMSB (2012)
Boguslaw Obara, Mark D. Fricker, David Gavaghan, Vicente Grau
Contrast-Independent Curvilinear Structure Detection in Biomedical Images. IEEE Trans. Image Process. 21 (5) (2012)
Sara-Jane Dunn, Paul L. Appleton, Scott A. Nelson, Inke S. Näthke, David Gavaghan, James M. Osborne
A Two-Dimensional Model of the Colonic Crypt Accounting for the Role of the Basement Membrane and Pericryptal Fibroblast Sheath. PLoS Comput. Biol. 8 (5) (2012)
Tom Doel, Tahreema N. Matin, Fergus Gleeson, David Gavaghan, Vicente Grau
Pulmonary lobe segmentation from CT images using fissureness, airways, vessels and multilevel B-splines. ISBI (2012)
Ilyas E. Karadag, Martin J. Bishop, Patrick Hales, Jürgen E. Schneider, Peter Kohl, David Gavaghan, Vicente Grau
Regionally Optimised Mathematical Models of Cardiac Myocyte Orientation in Rat Hearts. FIMH (2011)
Andrew Simpson, Mark Slaymaker, David Gavaghan
On the Secure Sharing and Aggregation of Data to Support Systems Biology Research. DILS (2010)
Colin Enticott, Thomas C. Peachey, David Abramson, Elena Mashkina, Chong-Yong Lee, Alan Bond, Gareth Kennedy, David Gavaghan, Darrell Elton
Electrochemical Parameter Optimization Using Scientific Workflows. eScience (2010)
Anna Sher, Ken Wang, Andrew J. Wathen, Gary R. Mirams, David Abramson, David Gavaghan
A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L-type Calcium Channel Modelling. eScience (2010)
Martin J. Bishop, Patrick Hales, Gernot Plank, David Gavaghan, Jürgen E. Schneider, Vicente Grau
Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model. FIMH (2009)
Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip J. Murray, James M. Osborne, Alex Walter, S. Jonathan Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan P. Whiteley, Helen M. Byrne, David Gavaghan
Chaste: A test-driven approach to software development for biological modelling. Comput. Phys. Commun. 180 (12) (2009)
Pras Pathmanathan, David Gavaghan, Jonathan P. Whiteley, S. Jonathan Chapman, J. Michael Brady
Predicting Tumor Location by Modeling the Deformation of the Breast. IEEE Trans. Biomed. Eng. 55 (10) (2008)
Anna Sher, David Abramson, Colin Enticott, Slavisa Garic, David Gavaghan, Denis Noble, Penelope Noble, Tom Peachey
Dynamics into Single Cell Ventricular Models. ICCS (1) (2008)
Michal Plotkowiak, Blanca Rodríguez, Gernot Plank, Jürgen E. Schneider, David Gavaghan, Peter Kohl, Vicente Grau
High Performance Computer Simulations of Cardiac Electrical Function Based on High Resolution MRI Datasets. ICCS (1) (2008)
Tahier Mansoori, Gernot Plank, Rebecca Burton, Jürgen E. Schneider, Peter Kohl, David Gavaghan, Vicente Grau
An Iterative Method for Registration of High-Resolution Cardiac Histoanatomical and Mri Images. ISBI (2007)
Sharon Lloyd, David Gavaghan, Andrew Simpson, Matthew Mascord, Clint Seneurine, Geoff Williams, Joe Pitt-Francis, David R. S. Boyd, Damian Mac Randal, Lakshmi Sastry
Integrative Biology - the challenges of developing a collaborative research environment for heart and cancer modelling. Future Gener. Comput. Syst. 23 (3) (2007)
Blanca Rodríguez, Brock Tice, Robert Blake, David Gavaghan, Natalia A. Trayanova
Vulnerability to electric shocks in the regionally-ischemic ventricles. EMBC (2006)
Mark Slaymaker, Andrew Simpson, Michael Brady, David Gavaghan, Fiona Reddington, Phil Quirke
A Prototype Infrastructure for the Secure Aggregation of Imaging and Pathology Data for Colorectal Cancer Care. CBMS (2006)
R. H. J. Begent, J. Michael Brady, Anthony Finkelstein, David Gavaghan, P. Kerr, H. Parkinson, Fiona Reddington, J. Max Wilkinson
Challenges of Ultra Large Scale Integration of Biomedical Computing Systems. CBMS (2005)
Jonathan P. Whiteley, David Gavaghan, Clive E. W. Hahn
Oxygen transport to muscle tissue where regions of low oxygen tension exist. Math. Comput. Model. 42 (9-10) (2005)
Pras Pathmanathan, David Gavaghan, Jonathan P. Whiteley, Michael Brady, Martyn P. Nash, Poul M. F. Nielsen, Vijay Rajagopal
Predicting Tumour Location by Simulating Large Deformations of the Breast Using a 3D Finite Element Model and Nonlinear Elasticity. MICCAI (2) (2004)
Dave Stainforth, Jamie Kettleborough, Andrew P. Martin, Andrew Simpson, R. Gillis, A. Akkas, R. Gault, Mat Collins, David Gavaghan, Myles Allen
Climateprediction.net: Design Principles for Publicresource Modeling Research. IASTED PDCS (2002)
Darragh McInerney, David Gavaghan, Michael Jeffrey Ward, Paul Houston, Philip K. Maini
The Dynamics and Pinning of a Spike for a Reaction-Diffusion System. SIAM J. Appl. Math. 62 (4) (2002)
Ken W. Brodlie, Jason D. Wood, David A. Duce, Julian R. Gallop, David Gavaghan, Michael B. Giles, S. Hague, Jeremy Walton, M. Rudgyard, Brian Collins, J. Ibbotson, Alan Knox
XML for Visualization. EuroWeb (2002)
Ljupco Todorovski, Saso Dzeroski, Ashwin Srinivasan, Jonathan P. Whiteley, David Gavaghan
Discovering the Structure of Partial Differential Equations from Example Behaviour. ICML (2000)