Ruth E. Baker

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 21

Top Topics

Stochastic Models

Bayesian Inference

Computational Model

Top Venues

J. Comput. Phys.

PLoS Comput. Biol.

J. Open Source Softw.

Appl. Math. Lett.

Publications

Carles Falcó, Ruth E. Baker, J. A. Carrillo
A Local Continuum Model of Cell-Cell Adhesion. SIAM J. Appl. Math. 84 (3) (2024)
Carles Falcó, Rebecca M. Crossley, Ruth E. Baker
Travelling waves in a minimal go-or-grow model of cell invasion. Appl. Math. Lett. 158 (2024)
Thomas P. Prescott, David J. Warne, Ruth E. Baker
Efficient multifidelity likelihood-free Bayesian inference with adaptive computational resource allocation. J. Comput. Phys. 496 (2024)
David J. Warne, Thomas P. Prescott, Ruth E. Baker, Matthew J. Simpson
Multifidelity multilevel Monte Carlo to accelerate approximate Bayesian parameter inference for partially observed stochastic processes. J. Comput. Phys. 469 (2022)
Simon Martina Perez, Heba Sailem, Ruth E. Baker
Efficient Bayesian inference for mechanistic modelling with high-throughput data. PLoS Comput. Biol. 18 (6) (2022)
David J. Warne, Ruth E. Baker, Matthew J. Simpson
Rapid Bayesian Inference for Expensive Stochastic Models. J. Comput. Graph. Stat. 31 (1) (2022)
Bartosz J. Bartmanski, Ruth E. Baker
Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains. J. Comput. Appl. Math. 395 (2021)
Thomas P. Prescott, Ruth E. Baker
Multifidelity Approximate Bayesian Computation with Sequential Monte Carlo Parameter Sampling. SIAM/ASA J. Uncertain. Quantification 9 (2) (2021)
Ryan J. Murphy, Pascal R. Buenzli, Ruth E. Baker, Matthew J. Simpson
Travelling waves in a free boundary mechanobiological model of an epithelial tissue. Appl. Math. Lett. 111 (2021)
Bartosz J. Bartmanski, Ruth E. Baker
StoSpa2: A C++ software package for stochastic simulations of spatially extended systems. J. Open Source Softw. 5 (55) (2020)
Thomas P. Prescott, Ruth E. Baker
Multifidelity Approximate Bayesian Computation. SIAM/ASA J. Uncertain. Quantification 8 (1) (2020)
Thomas Pak, Ruth E. Baker, Joe Pitt-Francis
Pakman: a modular, efficient and portable tool for approximate Bayesian inference. J. Open Source Softw. 5 (47) (2020)
Fergus R. Cooper, Ruth E. Baker, Miguel O. Bernabeu, Rafel Bordas, Louise Bowler, Alfonso Bueno-Orovio, Helen M. Byrne, Valentina Carapella, Louie Cardone-Noott, Jonathan Cooper, Sara Dutta, Benjamin D. Evans, Alexander G. Fletcher, James A. Grogan, Wenxian Guo, Daniel G. Harvey, Maurice Hendrix, David Kay, Jochen Kursawe, Philip K. Maini, Beth McMillan, Gary R. Mirams, James M. Osborne, Pras Pathmanathan, Joe Pitt-Francis, Martin Robinson, Blanca Rodríguez, Raymond J. Spiteri, David Gavaghan
Chaste: Cancer, Heart and Soft Tissue Environment. J. Open Source Softw. 5 (47) (2020)
John H. Lagergren, John T. Nardini, Ruth E. Baker, Matthew J. Simpson, Kevin B. Flores
Biologically-informed neural networks guide mechanistic modeling from sparse experimental data. PLoS Comput. Biol. 16 (12) (2020)
Ruth E. Baker, Gergely Röst
Global Dynamics of a Novel Delayed Logistic Equation Arising from Cell Biology. J. Nonlinear Sci. 30 (1) (2020)
Daniel B. Wilson, Ruth E. Baker, Francis G. Woodhouse
Displacement of Transport Processes on Networked Topologies. SIAM J. Appl. Math. 79 (5) (2019)
Christopher Lester, Christian A. Yates, Ruth E. Baker
Robustly simulating biochemical reaction kinetics using multi-level Monte Carlo approaches. J. Comput. Phys. 375 (2018)
David J. Warne, Ruth E. Baker, Matthew J. Simpson
Multilevel rejection sampling for approximate Bayesian computation. Comput. Stat. Data Anal. 124 (2018)
Jonathan U. Harrison, Ruth E. Baker
The impact of temporal sampling resolution on parameter inference for biological transport models. PLoS Comput. Biol. 14 (6) (2018)
Jochen Kursawe, Ruth E. Baker, Alexander G. Fletcher
Impact of implementation choices on quantitative predictions of cell-based computational models. J. Comput. Phys. 345 (2017)
Fergus R. Cooper, Ruth E. Baker, Alexander G. Fletcher
Numerical Analysis of the Immersed Boundary Method for Cell-Based Simulation. SIAM J. Sci. Comput. 39 (5) (2017)
Jochen Kursawe, Pavel A. Brodskiy, Jeremiah J. Zartman, Ruth E. Baker, Alexander G. Fletcher
Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces. PLoS Comput. Biol. 11 (12) (2015)
Benjamin L. Vaughan Jr., Ruth E. Baker, David Kay, Philip K. Maini
A Modified Oster-Murray-Harris Mechanical Model of Morphogenesis. SIAM J. Appl. Math. 73 (6) (2013)
Katrina K. Treloar, Matthew J. Simpson, Parvathi Haridas, Kerry J. Manton, David I. Leavesley, Donald L. S. McElwain, Ruth E. Baker
Multiple types of data are required to identify the mechanisms influencing the spatial expansion of melanoma cell colonies. BMC Syst. Biol. 7 (2013)
Gabriel Rosser, Alexander G. Fletcher, David A. Wilkinson, Jennifer A. de Beyer, Christian A. Yates, Judith P. Armitage, Philip K. Maini, Ruth E. Baker
. PLoS Comput. Biol. 9 (10) (2013)
Philip J. Murray, Philip K. Maini, Maksim V. Plikus, Cheng-Ming Chuong, Ruth E. Baker
Modelling Hair Follicle Growth Dynamics as an Excitable Medium. PLoS Comput. Biol. 8 (12) (2012)