Dario Ghersi

Publication Activity (10 Years)

Years Active: 2009-2022
Publications (10 Years): 15

Top Topics

Pseudorandom Number

Gene Expression

Monte Carlo Simulation

Network Properties

Top Venues

PLoS Comput. Biol.

Publications

William Gasper, Francesca Rossi, Matteo Ligorio, Dario Ghersi
Variant calling enhances the identification of cancer cells in single-cell RNA sequencing data. PLoS Comput. Biol. 18 (10) (2022)
William Gasper, Jiahao Ma, Dario Ghersi, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty, Parvathi Chundi
Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research. BIBM (2021)
Ryan Ehrlich, Larisa Kamga, Anna Gil, Katherine Luzuriaga, Liisa K. Selin, Dario Ghersi
SwarmTCR: a computational approach to predict the specificity of T cell receptors. BMC Bioinform. 22 (1) (2021)
William Gasper, Parvathi Chundi, Dario Ghersi
MeSH Indexing Using the Biomedical Citation Network. BCB (2020)
Sean West, Hesham Ali, Dario Ghersi
NEEP: null empirically estimated p-values for high-throughput molecular survival analysis. J. Open Source Softw. 5 (52) (2020)
Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper
Measurement of structural change in co-expression networks from cancer gene expression data. Int. J. Data Min. Bioinform. 24 (4) (2020)
Matthew L. Hale, Ishwor Thapa, Dario Ghersi
FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis. BMC Bioinform. 20 (1) (2019)
Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper
Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage. BIBM (2019)
Sean West, Sushil Kumar, Surinder K. Batra, Hesham Ali, Dario Ghersi
Uncovering and characterizing splice variants associated with survival in lung cancer patients. PLoS Comput. Biol. 15 (10) (2019)
Daniel Munro, Dario Ghersi, Mona Singh
Two critical positions in zinc finger domains are heavily mutated in three human cancer types. PLoS Comput. Biol. 14 (6) (2018)
Dario Ghersi, Abhishek Parakh, Mihaly Mezei
Comparison of a quantum random number generator with pseudorandom number generators for their use in molecular Monte Carlo simulations. J. Comput. Chem. 38 (31) (2017)
Ryan Ehrlich, Dario Ghersi
Analyzing T cell receptor alpha/beta usage in binding to the pMHC. BIBM (2017)
Filippo Castiglione, Dario Ghersi, Franco Celada
In-silico analysis of the "memory anti-Naïve" effect in anti-viral cross-reactive responses. BIBM (2017)
Kathryn M. Cooper, Dhundy Bastola, Robin A. Gandhi, Dario Ghersi, Steven H. Hinrichs, Marsha Morien, Ann L. Fruhling
Forecasting the Spread of Mosquito-Borne Disease using Publicly Accessible Data: A Case Study in Chikungunya. AMIA (2016)
Dario Ghersi, Roberto Sanchez
Recovering Bound Forms of Protein Structures Using the Elastic Network Model and Molecular Interaction Fields. BCB (2016)
Akshay Balasubramanya, Ishwor Thapa, Dhundy Bastola, Dario Ghersi
A novel approach to identify shared fragments in drugs and natural products. BIBM (2015)
Yuri Pritykin, Dario Ghersi, Mona Singh
Genome-Wide Detection and Analysis of Multifunctional Genes. PLoS Comput. Biol. 11 (10) (2015)
Dario Ghersi, Mona Singh
molBLOCKS: decomposing small molecule sets and uncovering enriched fragments. Bioinform. 30 (14) (2014)
Dario Ghersi, Mona Singh
Disentangling function from topology to infer the network properties of disease genes. BMC Syst. Biol. 7 (2013)
Dario Ghersi, Roberto Sanchez
EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures. Bioinform. 25 (23) (2009)
Marylens Hernandez, Dario Ghersi, Roberto Sanchez
SITEHOUND-web: a server for ligand binding site identification in protein structures. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)