EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures.
Dario GhersiRoberto SanchezPublished in: Bioinform. (2009)
Keyphrases
- protein protein
- protein structure
- binding sites
- protein sequences
- molecular biology
- protein families
- sequence alignment
- protein function
- computational methods
- sequence data
- transcription factors
- dna sequences
- protein protein interactions
- secondary structure
- experimentally determined
- amino acids
- gene expression
- amino acid sequences
- biological sequences
- statistical significance
- dna binding
- protein structure prediction
- physico chemical
- interaction networks
- computational approaches
- mass spectrometry
- predicting protein
- motif discovery
- computational biology
- transcription factor binding sites
- contact map
- network topology
- high throughput
- similarity search
- pairwise