Etienne Z. Gnimpieba

Publication Activity (10 Years)

Years Active: 2013-2024
Publications (10 Years): 24

Top Topics

Essential Genes

Network Analysis

Reverse Engineer

Highly Scalable

Top Venues

Publications

Shiva Aryal, Tuyen Do, Bisesh Heyojoo, Sandeep Chataut, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery. CoRR (2024)
Sandeep Chataut, Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Carol Lushbough, Etienne Z. Gnimpieba
Comparative Study of Domain Driven Terms Extraction Using Large Language Models. CoRR (2024)
Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. BIBM (2023)
Alain Bertrand Bomgni, Dialo Abdala, Bichar Dip Shrestha Gurung, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough. BIBM (2023)
Alain Bertrand Bomgni, Garrik Brel Jagho Mdemaya, Hafiz Munsub Ali, David R. Gnimpieba Zanfack, Etienne Z. Gnimpieba
ESPINA: efficient and secured protocol for emerging IoT network applications. Clust. Comput. 26 (1) (2023)
Ramesh Devadig, Bichar Dip Shrestha Gurung, Etienne Z. Gnimpieba, Bharath Jasthi, Venkataramana Gadhamshetty
Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach. BIBM (2023)
Alain Bertrand Bomgni, Claude Epiphanie Mbotchack Ngale, Shiva Aryal, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
NLPADADE: Leveraging Natural Language Processing for Automated Detection of Adverse Drug Effects. BIBM (2023)
Sam Haas, Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Etienne Z. Gnimpieba
SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning. BIBM (2023)
Ram Nageena Singh, Etienne Z. Gnimpieba, Rajesh Kumar Sani
Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20. BIBM (2023)
Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba
Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. BIBM (2023)
Ram Nageena Singh, Etienne Z. Gnimpieba, Rajesh Kumar Sani
Title: Challenges in single cells sequencing Microbial community and biofilm: A case of Oleidesulfovibrio alaskensis G20 NGS protocol. BIBM (2022)
Sam Haas, Timothy W. Hartman, Bichar Dip Shrestha Gurung, Tuyen Do, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. BIBM (2022)
Bichar Dip Shrestha Gurung, Ramesh Devadig, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba
U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings. BIBM (2022)
Alain Bertrand Bomgni, Ernest Basile Fotseu Fotseu, Daril Raoul Kengne Wambo, Rajesh Kumar Sani, Carol Lushbough, Etienne Z. Gnimpieba
Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set. BIBM (2022)
Thierry Kongne Nembot, Ernest Basile Fotseu Fotseu, Rajesh K. Sani, Etienne Z. Gnimpieba, Carol Lushbough, Alain Bertrand Bomgni
Prediction of essential genes in G20 using machine learning model. BIBM (2021)
William Gasper, Jiahao Ma, Dario Ghersi, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty, Parvathi Chundi
Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research. BIBM (2021)
Abhilash Kumar Tripathi, Priya Saxena, Payal Thakur, Shailabh Rauniyar, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani
Discovery of genes associated with sulfate-reducing bacteria biofilm using text mining and biological network analysis. BIBM (2021)
Ernest Basile Fotseu Fotseu, Thierry Kongne Nembot, Rajesh K. Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba, Alain Bertrand Bomgni
GenNER - A highly scalable and optimal NER method for text-based gene and protein recognition. BIBM (2021)
Priya Saxena, Abhilash Kumar Tripathi, Payal Thakur, Shailabh Rauniyar, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani
Integration of text mining and biological network analysis to access essential genes in Desulfovibrio alaskensis G20. BIBM (2021)
Payal Thakur, Shailabh Rauniyar, Abhilash Kumar Tripathi, Priya Saxena, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani
Identifying genes involved in biocorrosion from the literature using text-mining. BIBM (2021)
Mariah M. Hoffman, Carrie J. Minette, Shanta M. Messerli, Ratan D. Bhardwaj, Etienne Z. Gnimpieba
NanoStringBioNet: Integrated R framework for bioscience knowledge discovery from NanoString nCounter data. BIBM (2017)
Etienne Z. Gnimpieba, Menno S. VanDiermen, Shayla M. Gustafson, Bill Conn, Carol M. Lushbough
Bio-TDS: bioscience query tool discovery system. Nucleic Acids Res. 45 (Database-Issue) (2017)
Etienne Z. Gnimpieba, Mathialakan Thavappiragasam, Abalo Chango, Bill Conn, Carol M. Lushbough
SBMLDock: Docker Driven Systems Biology Tool Development and Usage. CMSB (2015)
Carol M. Lushbough, Etienne Z. Gnimpieba, Rion Dooley
Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure. Concurr. Comput. Pract. Exp. 27 (2) (2015)
Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba
Automatic biosystems comparison using semantic and name similarity. BCB (2014)
Etienne Z. Gnimpieba, Abalo Chango, Carol M. Lushbough
RNA-seq gene and transcript expression analysis using the BioExtract server and iPlant collaborative. BCB (2014)
Nick Weinandt, Laura M. Jackson, Etienne Z. Gnimpieba, Carol Lushbough
Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison. BCB (2014)
Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba
Heuristic parallelizable algorithm for similarity based biosystems comparison. BCB (2014)
Etienne Z. Gnimpieba, Douglas M. Jennewein, Luke Fuhrman, Carol Lushbough
Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches. CoRR (2013)
Carol Lushbough, Etienne Z. Gnimpieba, Rion Dooley
BioExtract Server, a Web-based workflow enabling system, leveraging iPlant collaborative resources. CLUSTER (2013)