Discovery of genes associated with sulfate-reducing bacteria biofilm using text mining and biological network analysis.
Abhilash Kumar TripathiPriya SaxenaPayal ThakurShailabh RauniyarVinoj GopalakrishnanRam Nageena SinghMathew A. OlakunleEtienne Z. GnimpiebaRajesh Kumar SaniPublished in: BIBM (2021)
Keyphrases
- network analysis
- text mining
- biomedical literature
- biological processes
- analysis of gene expression data
- biological entities
- knowledge discovery
- biological knowledge
- protein protein interactions
- escherichia coli
- gene expression analysis
- biologically meaningful
- regulatory networks
- biological networks
- gene expression data
- gene function
- data mining
- gene expression
- biological data
- community discovery
- systems biology
- information retrieval
- information networks
- genome sequencing
- natural language processing
- saccharomyces cerevisiae
- information extraction
- regulatory elements
- biological information
- metabolic pathways
- molecular biology
- protein interaction
- dynamic networks
- community detection
- transcription factor binding sites
- biological systems
- machine learning
- functional modules
- data analysis
- protein protein interaction networks
- gene ontology
- computational biology
- microarray
- microarray data
- drug design
- genomic data
- data sets
- sequence data
- gene regulatory networks
- motif discovery
- recommender systems
- computational methods